Ontology: Cellular Component (GO:0005682)

Definition: A ribonucleoprotein complex that contains small nuclear RNA U5.

Synonyms: snRNP U5

View Ontology: (graph) | (text)

This table lists the methods used to annotate genes either directly to the term U5 snRNP (17 genes) or to its variants containing one or more qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.

Annotation Method	GO Term	# Yeast Genes Annotated
Manually curated (download data)	U5 snRNP	17
High-throughput	none	none
Computational	none	none

Links to Additional Annotations:

• View annotations in multiple organisms using
• Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.

Annotation details for genes that have been directly annotated to the term U5 snRNP or its variants containing one or more qualifiers (NOT, contributes to, or colocalizes with).

U5 snRNP      17 genes directly annotated to this term
Locus	Evidence	Annotation Method	Reference	Assigned By
AAR2/YBL074C	IDA: Inferred from Direct Assay Assigned on 2003-04-08	manually curated	Gottschalk A, et al.  (2001) The yeast U5 snRNP coisolated with the U1 snRNP has an unexpected protein composition and includes the splicing factor Aar2p. RNA 7(11):1554-65	SGD
BRR2/YER172C	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
DIB1/YPR082C	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
LIN1/YHR156C	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
PRP18/YGR006W	IDA: Inferred from Direct Assay Assigned on 2007-08-14	manually curated	Horowitz DS and Abelson J  (1993) A U5 small nuclear ribonucleoprotein particle protein involved only in the second step of pre-mRNA splicing in Saccharomyces cerevisiae. Mol Cell Biol 13(5):2959-70	SGD
PRP28/YDR243C	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
PRP8/YHR165C	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
	IDA: Inferred from Direct Assay Assigned on 2007-11-01	manually curated	Boon KL, et al.  (2007) prp8 mutations that cause human retinitis pigmentosa lead to a U5 snRNP maturation defect in yeast. Nat Struct Mol Biol 14(11):1077-83	SGD
SMB1/YER029C	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
SMD1/YGR074W	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
SMD2/YLR275W	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
SMD3/YLR147C	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
SME1/YOR159C	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
SMX2/YFL017W-A	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
SMX3/YPR182W	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
SNR7-L/snR7-L	IDA: Inferred from Direct Assay Assigned on 2002-07-17	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
SNR7-S/snR7-S	IDA: Inferred from Direct Assay Assigned on 2002-07-17	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD
SNU114/YKL173W	IDA: Inferred from Direct Assay Assigned on 2005-10-03	manually curated	Stevens SW, et al.  (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53	SGD

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