GO term: ATP-dependent chromatin remodeling

Ontology: Biological Process (GO:0043044)

Definition: Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.

Synonyms: ATP-dependent chromatin remodelling

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Annotation Summary

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This table lists the methods used to annotate genes either directly to the term ATP-dependent chromatin remodeling (22 genes) or to its variants containing one or more qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.

Annotation Method	GO Term	# Yeast Genes Annotated
Manually curated (download data)	ATP-dependent chromatin remodeling	20
High-throughput	none	none
Computational (download data)	ATP-dependent chromatin remodeling	2

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Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.

Genes Annotated with this Term

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Annotation details for genes that have been directly annotated to the term ATP-dependent chromatin remodeling or its variants containing one or more qualifiers (NOT, contributes to, or colocalizes with).

ATP-dependent chromatin remodeling 22 genes directly annotated to this term
Locus	Evidence	Annotation Method	Reference	Assigned By
ARP7/YPR034W	IDA: Inferred from Direct Assay Assigned on 2002-06-06	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	UniProtKB
ARP9/YMR033W	IDA: Inferred from Direct Assay Assigned on 2007-01-19	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	UniProtKB
CHD1/YER164W	IDA: Inferred from Direct Assay Assigned on 2011-10-03	manually curated	Tran HG, et al. (2000) The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor. EMBO J 19(10):2323-31	SGD
DPB4/YDR121W	IDA: Inferred from Direct Assay Assigned on 2012-10-01	manually curated	Gangaraju VK, et al. (2009) Conformational changes associated with template commitment in ATP-dependent chromatin remodeling by ISW2. Mol Cell 35(1):58-69	SGD
FUN30/YAL019W	IMP: Inferred from Mutant Phenotype Assigned on 2012-10-04	manually curated	Awad S, et al. (2010) The Snf2 homolog Fun30 acts as a homodimeric ATP-dependent chromatin-remodeling enzyme. J Biol Chem 285(13):9477-84	SGD
ISW1/YBR245C	IEA: Inferred from Electronic Annotation with EBI:IPR015194 Last Updated 2013-03-02	computational	DDB, et al. (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
ISW2/YOR304W	IEA: Inferred from Electronic Annotation with EBI:IPR015194 Last Updated 2013-03-02	computational	DDB, et al. (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
LDB7/YBL006C	IDA: Inferred from Direct Assay Assigned on 2007-01-31	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	SGD
NPL6/YMR091C	IDA: Inferred from Direct Assay Assigned on 2007-01-24	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	SGD
RSC1/YGR056W	IC: Inferred By Curator from RSC complex, ISS: Inferred from Sequence or structural Similarity with SGD:RSC2 Assigned on 2007-02-01	manually curated	Cairns BR, et al. (1999) Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains. Mol Cell 4(5):715-23	SGD
RSC1/YGR056W	IC: Inferred By Curator from RSC complex Assigned on 2007-06-01	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	UniProtKB
RSC2/YLR357W	IDA: Inferred from Direct Assay Assigned on 2007-01-24	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	SGD
RSC3/YDR303C	IDA: Inferred from Direct Assay Assigned on 2007-01-24	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	SGD
RSC30/YHR056C	IDA: Inferred from Direct Assay Assigned on 2004-05-04	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	UniProtKB
RSC4/YKR008W	IDA: Inferred from Direct Assay Assigned on 2007-01-19	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	UniProtKB
RSC6/YCR052W	IDA: Inferred from Direct Assay Assigned on 2004-05-06	manually curated	Cairns BR, et al. (1996) RSC, an essential, abundant chromatin-remodeling complex. Cell 87(7):1249-60	UniProtKB
	IDA: Inferred from Direct Assay Assigned on 2004-05-06	manually curated	Lorch Y, et al. (1999) Histone octamer transfer by a chromatin-remodeling complex. Cell 96(3):389-92	UniProtKB
	IDA: Inferred from Direct Assay Assigned on 2004-05-06	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	UniProtKB
RSC8/YFR037C	IDA: Inferred from Direct Assay Assigned on 2004-05-26	manually curated	Cairns BR, et al. (1996) RSC, an essential, abundant chromatin-remodeling complex. Cell 87(7):1249-60	UniProtKB
RSC8/YFR037C	IDA: Inferred from Direct Assay Assigned on 2004-05-04	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	UniProtKB
RSC9/YML127W	IDA: Inferred from Direct Assay Assigned on 2007-01-19	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	UniProtKB
SFH1/YLR321C	IDA: Inferred from Direct Assay Assigned on 2007-01-19	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	UniProtKB
SNF2/YOR290C	IDA: Inferred from Direct Assay, IMP: Inferred from Mutant Phenotype Assigned on 2008-05-13	manually curated	Cote J, et al. (1994) Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265(5168):53-60	SGD
STH1/YIL126W	IDA: Inferred from Direct Assay Assigned on 2007-01-23	manually curated	Cairns BR, et al. (1996) RSC, an essential, abundant chromatin-remodeling complex. Cell 87(7):1249-60	SGD
	IDA: Inferred from Direct Assay Assigned on 2004-05-06	manually curated	Lorch Y, et al. (1999) Histone octamer transfer by a chromatin-remodeling complex. Cell 96(3):389-92	UniProtKB
	IDA: Inferred from Direct Assay Assigned on 2004-05-04	manually curated	Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34	UniProtKB
SWI1/YPL016W	IDA: Inferred from Direct Assay Assigned on 2008-05-13	manually curated	Cote J, et al. (1994) Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265(5168):53-60	SGD
SWI3/YJL176C	IDA: Inferred from Direct Assay Assigned on 2008-05-13	manually curated	Cote J, et al. (1994) Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265(5168):53-60	SGD

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