Ontology: Biological Process (GO:0034403)

Definition: Recognition of both the 5' and 3'-splice sites and positioning them in the correct alignment with respect to each other so that the second catalytic step of nuclear mRNA splicing can occur.

Synonyms: alignment of 3' and 5' splice sites of nuclear mRNA

View Ontology: (graph) | (text)

This table lists the methods used to annotate genes either directly to the term alignment of 3' and 5' splice sites of mRNA (2 genes) or to its variants containing one or more qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.

Annotation Method	GO Term	# Yeast Genes Annotated
Manually curated (download data)	alignment of 3' and 5' splice sites of mRNA	2
High-throughput	none	none
Computational	none	none

Links to Additional Annotations:

• View annotations in multiple organisms using
• Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.

Annotation details for genes that have been directly annotated to the term alignment of 3' and 5' splice sites of mRNA or its variants containing one or more qualifiers (NOT, contributes to, or colocalizes with).

alignment of 3' and 5' splice sites of mRNA      2 genes directly annotated to this term
Locus	Evidence	Annotation Method	Reference	Assigned By
SNR7-L/snR7-L	IMP: Inferred from Mutant Phenotype Assigned on 2008-04-14	manually curated	O'Keefe RT and Newman AJ  (1998) Functional analysis of the U5 snRNA loop 1 in the second catalytic step of yeast pre-mRNA splicing. EMBO J 17(2):565-74	SGD
SNR7-S/snR7-S	IMP: Inferred from Mutant Phenotype Assigned on 2008-04-14	manually curated	O'Keefe RT and Newman AJ  (1998) Functional analysis of the U5 snRNA loop 1 in the second catalytic step of yeast pre-mRNA splicing. EMBO J 17(2):565-74	SGD

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