GO term: transposition, RNA-mediated 
Ontology: Biological Process (GO:0032197)
Definition: Any process involved in a type of transpositional recombination which occurs via an RNA intermediate.
Synonyms: Class I transposition; retrotransposition; retrotransposon transposition; Tf transposition; Ty element transposition; Ty1 element transposition; Ty2 element transposition; Ty3 element transposition; RNA-mediated transposition
View Ontology:
(graph) | 
(text)
Definition: Any process involved in a type of transpositional recombination which occurs via an RNA intermediate.
Synonyms: Class I transposition; retrotransposition; retrotransposon transposition; Tf transposition; Ty element transposition; Ty1 element transposition; Ty2 element transposition; Ty3 element transposition; RNA-mediated transposition
View Ontology:
(graph) | (text)
This table lists the methods used to annotate genes either directly to the term
transposition, RNA-mediated (96 genes)
or to its variants containing one or more
qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.
Links to Additional Annotations:
| Annotation Method | GO Term | # Yeast Genes Annotated |
|---|---|---|
| Manually curated (download data) | transposition, RNA-mediated | 96 |
| High-throughput | none | none |
| Computational | none | none |
Links to Additional Annotations:
- View
annotations in multiple organisms using
- Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.
Annotation details for genes that have been directly annotated to the term
transposition, RNA-mediated or its variants containing one or more
qualifiers (NOT, contributes to, or colocalizes with).
| transposition, RNA-mediated 96 genes directly annotated to this term |
||||
|---|---|---|---|---|
| Locus | Evidence | Annotation Method | Reference | Assigned By |
| YER137C-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YER138C | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YER159C-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YER160C | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YFL002W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YFL002W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YGR027W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YGR027W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YGR038C-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YGR038C-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YGR109W-A | IMP: Inferred from Mutant Phenotype Assigned on 2012-06-08 |
manually curated | Larsen LS, et al. (2007) Ty3 capsid mutations reveal early and late functions of the amino-terminal domain. J Virol 81(13):6957-72 |
SGD |
| YGR109W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YGR161C-C | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YGR161C-D | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YGR161W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YGR161W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YHL009W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YHL009W-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YHR214C-B | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YHR214C-C | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YIL080W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YIL082W | IMP: Inferred from Mutant Phenotype Assigned on 2012-06-08 |
manually curated | Larsen LS, et al. (2007) Ty3 capsid mutations reveal early and late functions of the amino-terminal domain. J Virol 81(13):6957-72 |
SGD |
| YIL082W-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YJL113W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YJL114W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YJR026W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YJR027W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YJR028W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YJR029W | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
| YLR035C-A | ISS: Inferred from Sequence or structural Similarity Assigned on 2003-08-11 |
manually curated | Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 |
SGD |
