GO term: small-subunit processome 
Ontology: Cellular Component (GO:0032040)
Definition: A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
Synonyms: SSU processome; small subunit processome
View Ontology:
(graph) | 
(text)
Definition: A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
Synonyms: SSU processome; small subunit processome
View Ontology:
(graph) | (text)
This table lists the methods used to annotate genes either directly to the term
small-subunit processome (49 genes)
or to its variants containing one or more
qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.
Links to Additional Annotations:
| Annotation Method | GO Term | # Yeast Genes Annotated |
|---|---|---|
| Manually curated (download data) | small-subunit processome | 49 |
| High-throughput | none | none |
| Computational (download data) | small-subunit processome | 5 |
Links to Additional Annotations:
- View
annotations in multiple organisms using
- Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.
Annotation details for genes that have been directly annotated to the term
small-subunit processome or its variants containing one or more
qualifiers (NOT, contributes to, or colocalizes with).
| small-subunit processome 49 genes directly annotated to this term |
||||
|---|---|---|---|---|
| Locus | Evidence | Annotation Method | Reference | Assigned By |
| SNU13/YEL026W | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| SOF1/YLL011W | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| UTP10/YJL109C | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| UTP11/YKL099C | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| IEA: Inferred from Electronic Annotation with EBI:IPR007144 Last Updated 2013-03-02 |
computational | DDB, et al. (2001) Gene Ontology annotation through association of InterPro records with GO terms. |
InterPro | |
| UTP13/YLR222C | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| IEA: Inferred from Electronic Annotation with EBI:IPR013934 Last Updated 2013-03-02 |
computational | DDB, et al. (2001) Gene Ontology annotation through association of InterPro records with GO terms. |
InterPro | |
| UTP14/YML093W | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| IEA: Inferred from Electronic Annotation with EBI:IPR006709 Last Updated 2013-03-02 |
computational | DDB, et al. (2001) Gene Ontology annotation through association of InterPro records with GO terms. |
InterPro | |
| UTP15/YMR093W | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| UTP18/YJL069C | IDA: Inferred from Direct Assay Assigned on 2007-09-19 |
manually curated | Bernstein KA, et al. (2004) The small-subunit processome is a ribosome assembly intermediate. Eukaryot Cell 3(6):1619-26 |
SGD |
| UTP20/YBL004W | IDA: Inferred from Direct Assay Assigned on 2007-09-19 |
manually curated | Bernstein KA, et al. (2004) The small-subunit processome is a ribosome assembly intermediate. Eukaryot Cell 3(6):1619-26 |
SGD |
| UTP21/YLR409C | IDA: Inferred from Direct Assay Assigned on 2007-09-19 |
manually curated | Bernstein KA, et al. (2004) The small-subunit processome is a ribosome assembly intermediate. Eukaryot Cell 3(6):1619-26 |
SGD |
| IEA: Inferred from Electronic Annotation with EBI:IPR007319 Last Updated 2013-03-02 |
computational | DDB, et al. (2001) Gene Ontology annotation through association of InterPro records with GO terms. |
InterPro | |
| UTP22/YGR090W | IDA: Inferred from Direct Assay Assigned on 2007-09-19 |
manually curated | Bernstein KA, et al. (2004) The small-subunit processome is a ribosome assembly intermediate. Eukaryot Cell 3(6):1619-26 |
SGD |
| UTP23/YOR004W | IDA: Inferred from Direct Assay, IPI: Inferred from Physical Interaction with SGD:MPP10 Assigned on 2006-07-06 |
manually curated | Bleichert F, et al. (2006) The PINc domain protein Utp24, a putative nuclease, is required for the early cleavage steps in 18S rRNA maturation. Proc Natl Acad Sci U S A 103(25):9464-9 |
SGD |
| UTP25/YIL091C | IPI: Inferred from Physical Interaction with SGD:SAS10, SGD:MPP10 Assigned on 2010-06-15 |
manually curated | Goldfeder MB and Oliveira CC (2010) Utp25p, a nucleolar Saccharomyces cerevisiae protein, interacts with U3 snoRNP subunits and affects processing of the 35S pre-rRNA. FEBS J 277(13):2838-52 |
SGD |
| IDA: Inferred from Direct Assay Assigned on 2010-11-04 |
manually curated | Charette JM and Baserga SJ (2010) The DEAD-box RNA helicase-like Utp25 is an SSU processome component. RNA 16(11):2156-69 |
SGD | |
| UTP4/YDR324C | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| UTP5/YDR398W | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| UTP6/YDR449C | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| UTP7/YER082C | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| UTP8/YGR128C | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
| UTP9/YHR196W | IDA: Inferred from Direct Assay Assigned on 2007-08-03 |
manually curated | Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70 |
SGD |
