Ontology: Cellular Component (GO:0031429)

Definition: A box H/ACA RNP complex that is located in the nucleolus.

Synonyms: box H/ACA snoRNP pseudouridylase complex

View Ontology: (graph) | (text)

This table lists the methods used to annotate genes either directly to the term box H/ACA snoRNP complex (33 genes) or to its variants containing one or more qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.

Annotation Method	GO Term	# Yeast Genes Annotated
Manually curated (download data)	box H/ACA snoRNP complex	33
High-throughput	none	none
Computational (download data)	box H/ACA snoRNP complex	1

Links to Additional Annotations:

• View annotations in multiple organisms using
• Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.

Annotation details for genes that have been directly annotated to the term box H/ACA snoRNP complex or its variants containing one or more qualifiers (NOT, contributes to, or colocalizes with).

box H/ACA snoRNP complex      33 genes directly annotated to this term
Locus	Evidence	Annotation Method	Reference	Assigned By
CBF5/YLR175W	IPI: Inferred from Physical Interaction with SGD:SNR3, SGD:SNR10, SGD:SNR11, SGD:SNR30, SGD:SNR31, SGD:SNR33, SGD:SNR37 Assigned on 2006-09-20	manually curated	Lafontaine DLJ, et al.  (1998) The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 12(4):527-37	SGD
GAR1/YHR089C	IPI: Inferred from Physical Interaction with SGD:SNR30 Assigned on 2006-09-26	manually curated	Bally M, et al.  (1988) SnR30: a new, essential small nuclear RNA from Saccharomyces cerevisiae. Nucleic Acids Res 16(12):5291-303	SGD
	IPI: Inferred from Physical Interaction with EBI:P32495 Assigned on 2007-06-15	manually curated	Henras A, et al.  (1998) Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs. EMBO J 17(23):7078-90	UniProtKB
	IEA: Inferred from Electronic Annotation with EBI:IPR021154 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
NHP2/YDL208W	IPI: Inferred from Physical Interaction Assigned on 2011-02-07	manually curated	Henras A, et al.  (1998) Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs. EMBO J 17(23):7078-90	SGD
NOP10/YHR072W-A	IPI: Inferred from Physical Interaction Assigned on 2011-02-07	manually curated	Henras A, et al.  (1998) Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs. EMBO J 17(23):7078-90	SGD
SNR10/snR10	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
	IPI: Inferred from Physical Interaction with SGD:CBF5 Assigned on 2006-09-20	manually curated	Lafontaine DLJ, et al.  (1998) The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 12(4):527-37	SGD
SNR11/snR11	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
	IPI: Inferred from Physical Interaction with SGD:CBF5 Assigned on 2006-09-20	manually curated	Lafontaine DLJ, et al.  (1998) The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 12(4):527-37	SGD
SNR161/snR161	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR189/snR189	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR191/snR191	IPI: Inferred from Physical Interaction with SGD:GAR1 Assigned on 2006-09-11	manually curated	Badis G, et al.  (2003) A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast. RNA 9(7):771-9	SGD
	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR3/snR3	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
	IPI: Inferred from Physical Interaction with SGD:CBF5 Assigned on 2006-09-20	manually curated	Lafontaine DLJ, et al.  (1998) The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 12(4):527-37	SGD
SNR30/snR30	IPI: Inferred from Physical Interaction with SGD:GAR1 Assigned on 2006-09-26	manually curated	Bally M, et al.  (1988) SnR30: a new, essential small nuclear RNA from Saccharomyces cerevisiae. Nucleic Acids Res 16(12):5291-303	SGD
	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
	IPI: Inferred from Physical Interaction with SGD:CBF5 Assigned on 2006-09-20	manually curated	Lafontaine DLJ, et al.  (1998) The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 12(4):527-37	SGD
SNR31/snR31	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
	IPI: Inferred from Physical Interaction with SGD:CBF5 Assigned on 2006-09-20	manually curated	Lafontaine DLJ, et al.  (1998) The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 12(4):527-37	SGD
SNR32/snR32	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR33/snR33	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
	IPI: Inferred from Physical Interaction with SGD:CBF5 Assigned on 2006-09-20	manually curated	Lafontaine DLJ, et al.  (1998) The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 12(4):527-37	SGD
SNR34/snR34	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR35/snR35	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR36/snR36	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR37/snR37	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
	IPI: Inferred from Physical Interaction with SGD:CBF5 Assigned on 2006-09-20	manually curated	Lafontaine DLJ, et al.  (1998) The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 12(4):527-37	SGD
SNR42/snR42	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
	IPI: Inferred from Physical Interaction with SGD:CBF5 Assigned on 2006-09-20	manually curated	Lafontaine DLJ, et al.  (1998) The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 12(4):527-37	SGD
SNR43/snR43	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR44/snR44	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR46/snR46	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR49/snR49	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR5/snR5	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR8/snR8	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR80/snR80	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR81/snR81	IC: Inferred By Curator from rRNA pseudouridylation guide activity Assigned on 2006-09-11	manually curated	Schattner P, et al.  (2004) Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res 32(14):4281-96	SGD
SNR82/snR82	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-11	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR83/snR83	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD
SNR84/snR84	IPI: Inferred from Physical Interaction with SGD:NHP2, SGD:GAR1 Assigned on 2006-09-08	manually curated	Torchet C, et al.  (2005) The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11(6):928-38	SGD

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