GO term: tRNA wobble uridine modification 
Ontology: Biological Process (GO:0002098)
Definition: The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
View Ontology:
(graph) | 
(text)
Definition: The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
View Ontology:
(graph) | (text)
This table lists the methods used to annotate genes either directly to the term
tRNA wobble uridine modification (23 genes)
or to its variants containing one or more
qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.
Links to Additional Annotations:
| Annotation Method | GO Term | # Yeast Genes Annotated |
|---|---|---|
| Manually curated (download data) | tRNA wobble uridine modification | 22 |
| High-throughput | none | none |
| Computational (download data) | tRNA wobble uridine modification | 1 |
Links to Additional Annotations:
- View
annotations in multiple organisms using
- Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.
Annotation details for genes that have been directly annotated to the term
tRNA wobble uridine modification or its variants containing one or more
qualifiers (NOT, contributes to, or colocalizes with).
| tRNA wobble uridine modification 23 genes directly annotated to this term |
||||
|---|---|---|---|---|
| Locus | Evidence | Annotation Method | Reference | Assigned By |
| ATS1/YAL020C | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| CFD1/YIL003W | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| CIA1/YDR267C | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| ELP2/YGR200C | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| ELP3/YPL086C | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| ELP4/YPL101W | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| ELP6/YMR312W | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| HRR25/YPL204W | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| IKI3/YLR384C | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| ISU1/YPL135W | IGI: Inferred from Genetic Interaction with SGD:ISU2 Assigned on 2009-03-11 |
manually curated | Nakai Y, et al. (2007) Thio Modification of Yeast Cytosolic tRNA Is an Iron-Sulfur Protein-Dependent Pathway. Mol Cell Biol 27(8):2841-7 |
SGD |
| ISU2/YOR226C | IGI: Inferred from Genetic Interaction with SGD:ISU1 Assigned on 2009-03-11 |
manually curated | Nakai Y, et al. (2007) Thio Modification of Yeast Cytosolic tRNA Is an Iron-Sulfur Protein-Dependent Pathway. Mol Cell Biol 27(8):2841-7 |
SGD |
| KTI11/YBL071W-A | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| KTI12/YKL110C | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| MTO1/YGL236C | IEA: Inferred from Electronic Annotation with EBI:IPR004416 Last Updated 2013-03-02 |
computational | DDB, et al. (2001) Gene Ontology annotation through association of InterPro records with GO terms. |
InterPro |
| NBP35/YGL091C | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| NCS6/YGL211W | IMP: Inferred from Mutant Phenotype Assigned on 2007-07-11 |
manually curated | Bjork GR, et al. (2007) A conserved modified wobble nucleoside (mcm5s2U) in lysyl-tRNA is required for viability in yeast. RNA 13(8):1245-55 |
SGD |
| IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD | |
| NFS1/YCL017C | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| SAP185/YJL098W | IGI: Inferred from Genetic Interaction with SGD:SAP190 Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| SAP190/YKR028W | IGI: Inferred from Genetic Interaction with SGD:SAP185 Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| SIT4/YDL047W | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| TRM9/YML014W | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| TUM1/YOR251C | IMP: Inferred from Mutant Phenotype Assigned on 2008-09-15 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
| URM1/YIL008W | IMP: Inferred from Mutant Phenotype Assigned on 2009-03-11 |
manually curated | Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 |
SGD |
