Ontology: Biological Process (GO:0001522)

Definition: The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.

Synonyms: pseudouridylation

View Ontology: (graph) | (text)

This table lists the methods used to annotate genes either directly to the term pseudouridine synthesis (10 genes) or to its variants containing one or more qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.

Annotation Method	GO Term	# Yeast Genes Annotated
Manually curated (download data)	pseudouridine synthesis	1
High-throughput	none	none
Computational (download data)	pseudouridine synthesis	10

Links to Additional Annotations:

• View annotations in multiple organisms using
• Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.

Annotation details for genes that have been directly annotated to the term pseudouridine synthesis or its variants containing one or more qualifiers (NOT, contributes to, or colocalizes with).

pseudouridine synthesis      10 genes directly annotated to this term
Locus	Evidence	Annotation Method	Reference	Assigned By
CBF5/YLR175W	IEA: Inferred from Electronic Annotation with EBI:IPR020103 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
DEG1/YFL001W	IEA: Inferred from Electronic Annotation with EBI:IPR001406, EBI:IPR020095, EBI:IPR020097, EBI:IPR020103, EBI:IPR020094 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
PUS1/YPL212C	IEA: Inferred from Electronic Annotation with EBI:IPR001406, EBI:IPR020095, EBI:IPR020097, EBI:IPR020103, EBI:IPR020094 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
PUS2/YGL063W	IEA: Inferred from Electronic Annotation with EBI:IPR001406, EBI:IPR020095, EBI:IPR020097, EBI:IPR020103, EBI:IPR020094 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
PUS4/YNL292W	IEA: Inferred from Electronic Annotation with EBI:IPR014780, EBI:IPR020103 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
PUS5/YLR165C	IMP: Inferred from Mutant Phenotype Assigned on 2002-10-11	manually curated	Ansmant I, et al.  (2000) Identification of the Saccharomyces cerevisiae RNA:pseudouridine synthase responsible for formation of psi(2819) in 21S mitochondrial ribosomal RNA. Nucleic Acids Res 28(9):1941-6	SGD
	IEA: Inferred from Electronic Annotation with EBI:IPR006145, EBI:IPR006224, EBI:IPR020103 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
PUS6/YGR169C	IEA: Inferred from Electronic Annotation with EBI:IPR006145, EBI:IPR006224, EBI:IPR020103 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
PUS7/YOR243C	IEA: Inferred from Electronic Annotation with EBI:IPR001656, EBI:IPR011760, EBI:IPR017091, EBI:IPR020103, EBI:IPR020119 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
PUS9/YDL036C	IEA: Inferred from Electronic Annotation with EBI:IPR006145, EBI:IPR006224, EBI:IPR006225, EBI:IPR020103 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro
RIB2/YOL066C	IEA: Inferred from Electronic Annotation with EBI:IPR006224, EBI:IPR006225, EBI:IPR020103, EBI:IPR006145 Last Updated 2013-03-02	computational	DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms.	InterPro

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