Ontology: Biological Process (GO:0001080)

Definition: A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.

Synonyms: positive regulation of transcription from RNA polymerase II promoter by nitrogen catabolites

View Ontology: (graph) | (text)

This table lists the methods used to annotate genes either directly to the term nitrogen catabolite activation of transcription from RNA polymerase II promoter (6 genes) or to its variants containing one or more qualifiers (0 genes). Note that some genes may have been annotated by more than one method so the numbers in the table below may not add up to the totals given here.

Annotation Method	GO Term	# Yeast Genes Annotated
Manually curated (download data)	nitrogen catabolite activation of transcription from RNA polymerase II promoter	6
High-throughput	none	none
Computational	none	none

Links to Additional Annotations:

• View annotations in multiple organisms using
• Search for S. cerevisiae genes annotated, by the Manually curated or High-throughput methods, to this term or to any terms that are descended from this term, i.e., child terms representing more specific biology than this term.

Annotation details for genes that have been directly annotated to the term nitrogen catabolite activation of transcription from RNA polymerase II promoter or its variants containing one or more qualifiers (NOT, contributes to, or colocalizes with).

nitrogen catabolite activation of transcription from RNA polymerase II promoter      6 genes directly annotated to this term
Locus	Evidence	Annotation Method	Reference	Assigned By
DAL81/YIR023W	IMP: Inferred from Mutant Phenotype Assigned on 2011-12-21	manually curated	Talibi D, et al.  (1995) Cis- and trans-acting elements determining induction of the genes of the gamma-aminobutyrate (GABA) utilization pathway in Saccharomyces cerevisiae. Nucleic Acids Res 23(4):550-7	SGD
	IPI: Inferred from Physical Interaction with SGD:DAL82 Assigned on 2011-12-21	manually curated	Scott S, et al.  (2000) Roles of the Dal82p domains in allophanate/oxalurate-dependent gene expression in Saccharomyces cerevisiae. J Biol Chem 275(40):30886-93	SGD
DAL82/YNL314W	IMP: Inferred from Mutant Phenotype, IPI: Inferred from Physical Interaction with SGD:DAL81 Assigned on 2011-12-21	manually curated	Scott S, et al.  (2000) Roles of the Dal82p domains in allophanate/oxalurate-dependent gene expression in Saccharomyces cerevisiae. J Biol Chem 275(40):30886-93	SGD
GAT1/YFL021W	IGI: Inferred from Genetic Interaction with SGD:GLN3, IMP: Inferred from Mutant Phenotype Assigned on 2011-12-22	manually curated	Stanbrough M, et al.  (1995) Role of the GATA factors Gln3p and Nil1p of Saccharomyces cerevisiae in the expression of nitrogen-regulated genes. Proc Natl Acad Sci U S A 92(21):9450-4	SGD
GCN4/YEL009C	IMP: Inferred from Mutant Phenotype Assigned on 2011-11-14	manually curated	Teixeira MC, et al.  (2011) Yeast response and tolerance to polyamine toxicity involving the drug : H+ antiporter Qdr3 and the transcription factors Yap1 and Gcn4. Microbiology 157(Pt 4):945-56	SGD
GLN3/YER040W	IMP: Inferred from Mutant Phenotype Assigned on 2011-06-23	manually curated	Stanbrough M, et al.  (1995) Role of the GATA factors Gln3p and Nil1p of Saccharomyces cerevisiae in the expression of nitrogen-regulated genes. Proc Natl Acad Sci U S A 92(21):9450-4	SGD
UGA3/YDL170W	IMP: Inferred from Mutant Phenotype Assigned on 2011-10-13	manually curated	Talibi D, et al.  (1995) Cis- and trans-acting elements determining induction of the genes of the gamma-aminobutyrate (GABA) utilization pathway in Saccharomyces cerevisiae. Nucleic Acids Res 23(4):550-7	SGD

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