AI5_BETA/Q0075 Gene Ontology Annotations Help

This page displays GO annotations in different sections according to the annotation method used to add that annotation to SGD.

AI5_BETA Manually curated*:

Last Reviewed on: 2002-11-19    Molecular Function | Biological Process | Cellular Component

Manually curated Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
molecular_function
unknown
ND: No Biological Data Available
Assigned on 2002-09-25
SGD  (2002) Use of the ND evidence code for Gene Ontology (GO) terms in SGD () SGD

Manually curated Biological Process
Annotation(s) Evidence Reference(s) Assigned By
biological_process
unknown
ND: No Biological Data Available
Assigned on 2002-09-25
SGD  (2002) Use of the ND evidence code for Gene Ontology (GO) terms in SGD () SGD

Manually curated Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
mitochondrion TAS: Traceable Author Statement
Assigned on 2002-11-19
Foury F, et al.  (1998) The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440(3):325-31 SGD

* Manually curated GO annotations reflect our best understanding of the basic molecular function, biological process, and cellular component for this gene product. Manually curated annotations are assigned by SGD curators based on published papers when available, or by curatorial statements if necessary. Curators periodically review all Manually curated GO annotations for accuracy and completeness. The "Last Reviewed on:" date at the top of this section indicates when these annotations were last reviewed.


AI5_BETA High-throughput**:


There are no High-throughput annotations for AI5_BETA

** GO annotations from High-throughput experiments are made based on a variety of large scale high-throughput experiments, including genome-wide experiments. Many of these annotations are made based on GO annotations (or mappings to GO annotations) assigned by the authors, rather than SGD curators. While SGD curators read these publications and often work closely with authors to incorporate the information, each individual annotation may not necessarily be reviewed by a curator. GO Annotations from high-throughput experiments will be assigned only when this type of data is available, and thus may not be assigned in all three aspects of the Gene Ontologies.


AI5_BETA Computational***:

Molecular Function | Biological Process | Cellular Component

Computational Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
DNA binding IEA: Inferred from Electronic Annotation
with EBI:IPR001982
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
endonuclease activity IEA: Inferred from Electronic Annotation
with EBI:IPR001982
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
IEA: Inferred from Electronic Annotation
with EBI:KW-0255
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
hydrolase activity IEA: Inferred from Electronic Annotation
with EBI:KW-0378
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
nuclease activity IEA: Inferred from Electronic Annotation
with EBI:KW-0540
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB

Computational Biological Process
Annotation(s) Evidence Reference(s) Assigned By
intron homing IEA: Inferred from Electronic Annotation
with EBI:IPR001982
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
IEA: Inferred from Electronic Annotation
with EBI:KW-0404
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
nucleic acid phosphodiester bond hydrolysis IEA: Inferred from Electronic Annotation
with EBI:KW-0540
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. GOC

Computational Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
mitochondrion IEA: Inferred from Electronic Annotation
with EBI:SL-0173
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. UniProtKB
IEA: Inferred from Electronic Annotation
with EBI:KW-0496
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB

*** Computational GO Annotations are predictions. These annotations are NOT reviewed by a curator. Currently, all computational GO annotations for S. cerevisiae are assigned by an external source (for example, the Gene Ontology Annotation (GOA) project of the European Bioinformatics Institute (EBI)).