SSU1/YPL092W Gene Ontology Annotations Help

This page displays GO annotations in different sections according to the annotation method used to add that annotation to SGD.

SSU1 Manually curated*:

Last Reviewed on: 2002-04-16    Molecular Function | Biological Process | Cellular Component

Manually curated Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
sulfite transmembrane transporter activity IDA: Inferred from Direct Assay
Assigned on 2002-04-16
Park H and Bakalinsky AT  (2000) SSU1 mediates sulphite efflux in Saccharomyces cerevisiae. Yeast 16(10):881-8 SGD

Manually curated Biological Process
Annotation(s) Evidence Reference(s) Assigned By
sulfite transport IDA: Inferred from Direct Assay
Assigned on 2002-04-04
Park H and Bakalinsky AT  (2000) SSU1 mediates sulphite efflux in Saccharomyces cerevisiae. Yeast 16(10):881-8 SGD

Manually curated Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
plasma membrane IDA: Inferred from Direct Assay
Assigned on 2002-04-03
Avram D and Bakalinsky AT  (1997) SSU1 encodes a plasma membrane protein with a central role in a network of proteins conferring sulfite tolerance in Saccharomyces cerevisiae. J Bacteriol 179(18):5971-4 SGD

* Manually curated GO annotations reflect our best understanding of the basic molecular function, biological process, and cellular component for this gene product. Manually curated annotations are assigned by SGD curators based on published papers when available, or by curatorial statements if necessary. Curators periodically review all Manually curated GO annotations for accuracy and completeness. The "Last Reviewed on:" date at the top of this section indicates when these annotations were last reviewed.


SSU1 High-throughput**:

Cellular Component

High-throughput Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
integral to membrane ISM: Inferred from Sequence Model
Assigned on 2011-05-31
De Hertogh B, et al.  (2002) Phylogenetic classification of transporters and other membrane proteins from Saccharomyces cerevisiae. Funct Integr Genomics 2(4-5):154-70 SGD

** GO annotations from High-throughput experiments are made based on a variety of large scale high-throughput experiments, including genome-wide experiments. Many of these annotations are made based on GO annotations (or mappings to GO annotations) assigned by the authors, rather than SGD curators. While SGD curators read these publications and often work closely with authors to incorporate the information, each individual annotation may not necessarily be reviewed by a curator. GO Annotations from high-throughput experiments will be assigned only when this type of data is available, and thus may not be assigned in all three aspects of the Gene Ontologies.


SSU1 Computational***:

Biological Process | Cellular Component

Computational Biological Process
Annotation(s) Evidence Reference(s) Assigned By
transmembrane transport IEA: Inferred from Electronic Annotation
with EBI:IPR004695
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
transport IEA: Inferred from Electronic Annotation
with EBI:KW-0813
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB

Computational Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
integral to membrane IEA: Inferred from Electronic Annotation
with EBI:IPR004695
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
IEA: Inferred from Electronic Annotation
with EBI:KW-0812
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
membrane IEA: Inferred from Electronic Annotation
with EBI:KW-0472
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
plasma membrane IEA: Inferred from Electronic Annotation
with EBI:SL-0039
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. UniProtKB
IEA: Inferred from Electronic Annotation
with EBI:KW-1003
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB

*** Computational GO Annotations are predictions. These annotations are NOT reviewed by a curator. Currently, all computational GO annotations for S. cerevisiae are assigned by an external source (for example, the Gene Ontology Annotation (GOA) project of the European Bioinformatics Institute (EBI)).