IMH1/YLR309C Gene Ontology Annotations Help

This page displays GO annotations in different sections according to the annotation method used to add that annotation to SGD.

IMH1 Manually curated*:

Last Reviewed on: 2002-09-26    Molecular Function | Biological Process | Cellular Component

Manually curated Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
molecular_function
unknown
ND: No Biological Data Available
Assigned on 2002-09-26
SGD  (2002) Use of the ND evidence code for Gene Ontology (GO) terms in SGD () SGD

Manually curated Biological Process
Annotation(s) Evidence Reference(s) Assigned By
Golgi to plasma membrane protein transport IMP: Inferred from Mutant Phenotype
Assigned on 2006-09-26
Liu YW, et al.  (2006) Arl1p is involved in transport of the GPI-anchored protein Gas1p from the late Golgi to the plasma membrane. J Cell Sci 119(Pt 18):3845-55 SGD
vesicle-mediated transport IMP: Inferred from Mutant Phenotype
Assigned on 2002-09-26
Tsukada M, et al.  (1999) Structural and functional analysis of a novel coiled-coil protein involved in Ypt6 GTPase-regulated protein transport in yeast. Mol Biol Cell 10(1):63-75 SGD

Manually curated Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
cytosol IDA: Inferred from Direct Assay
Assigned on 2002-09-26
Tsukada M, et al.  (1999) Structural and functional analysis of a novel coiled-coil protein involved in Ypt6 GTPase-regulated protein transport in yeast. Mol Biol Cell 10(1):63-75 SGD
Golgi apparatus IDA: Inferred from Direct Assay
Assigned on 2005-05-23
Behnia R, et al.  (2004) Targeting of the Arf-like GTPase Arl3p to the Golgi requires N-terminal acetylation and the membrane protein Sys1p. Nat Cell Biol 6(5):405-13 SGD

* Manually curated GO annotations reflect our best understanding of the basic molecular function, biological process, and cellular component for this gene product. Manually curated annotations are assigned by SGD curators based on published papers when available, or by curatorial statements if necessary. Curators periodically review all Manually curated GO annotations for accuracy and completeness. The "Last Reviewed on:" date at the top of this section indicates when these annotations were last reviewed.


IMH1 High-throughput**:


There are no High-throughput annotations for IMH1

** GO annotations from High-throughput experiments are made based on a variety of large scale high-throughput experiments, including genome-wide experiments. Many of these annotations are made based on GO annotations (or mappings to GO annotations) assigned by the authors, rather than SGD curators. While SGD curators read these publications and often work closely with authors to incorporate the information, each individual annotation may not necessarily be reviewed by a curator. GO Annotations from high-throughput experiments will be assigned only when this type of data is available, and thus may not be assigned in all three aspects of the Gene Ontologies.


IMH1 Computational***:

Biological Process | Cellular Component

Computational Biological Process
Annotation(s) Evidence Reference(s) Assigned By
protein targeting to Golgi IEA: Inferred from Electronic Annotation
with EBI:IPR000237
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
protein transport IEA: Inferred from Electronic Annotation
with EBI:KW-0653
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
response to stress IEA: Inferred from Electronic Annotation
with EBI:KW-0346
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
transport IEA: Inferred from Electronic Annotation
with EBI:KW-0813
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB

Computational Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
cytoplasm IEA: Inferred from Electronic Annotation
with EBI:SL-0086
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. UniProtKB
IEA: Inferred from Electronic Annotation
with EBI:KW-0963
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
Golgi apparatus IEA: Inferred from Electronic Annotation
with EBI:KW-0333
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
Golgi membrane IEA: Inferred from Electronic Annotation
with EBI:SL-0134
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. UniProtKB
membrane IEA: Inferred from Electronic Annotation
with EBI:KW-0472
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB

*** Computational GO Annotations are predictions. These annotations are NOT reviewed by a curator. Currently, all computational GO annotations for S. cerevisiae are assigned by an external source (for example, the Gene Ontology Annotation (GOA) project of the European Bioinformatics Institute (EBI)).