SOR1/YJR159W Gene Ontology Annotations Help

This page displays GO annotations in different sections according to the annotation method used to add that annotation to SGD.

SOR1 Manually curated*:

Last Reviewed on: 2008-07-21    Molecular Function | Biological Process | Cellular Component

Manually curated Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
L-iditol 2-dehydrogenase activity ISS: Inferred from Sequence or structural Similarity
with EBI:P07846
Assigned on 2008-07-21
IDA: Inferred from Direct Assay
Assigned on 2008-07-18
Sarthy AV, et al.  (1994) Cloning and sequence determination of the gene encoding sorbitol dehydrogenase from Saccharomyces cerevisiae. Gene 140(1):121-6 SGD

Manually curated Biological Process
Annotation(s) Evidence Reference(s) Assigned By
hexose metabolic process IEP: Inferred from Expression Pattern
Assigned on 2008-07-21
Sarthy AV, et al.  (1994) Cloning and sequence determination of the gene encoding sorbitol dehydrogenase from Saccharomyces cerevisiae. Gene 140(1):121-6 SGD

Manually curated Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
cellular_component
unknown
ND: No Biological Data Available
Assigned on 2008-07-21
SGD  (2002) Use of the ND evidence code for Gene Ontology (GO) terms in SGD () SGD

* Manually curated GO annotations reflect our best understanding of the basic molecular function, biological process, and cellular component for this gene product. Manually curated annotations are assigned by SGD curators based on published papers when available, or by curatorial statements if necessary. Curators periodically review all Manually curated GO annotations for accuracy and completeness. The "Last Reviewed on:" date at the top of this section indicates when these annotations were last reviewed.


SOR1 High-throughput**:


There are no High-throughput annotations for SOR1

** GO annotations from High-throughput experiments are made based on a variety of large scale high-throughput experiments, including genome-wide experiments. Many of these annotations are made based on GO annotations (or mappings to GO annotations) assigned by the authors, rather than SGD curators. While SGD curators read these publications and often work closely with authors to incorporate the information, each individual annotation may not necessarily be reviewed by a curator. GO Annotations from high-throughput experiments will be assigned only when this type of data is available, and thus may not be assigned in all three aspects of the Gene Ontologies.


SOR1 Computational***:

Molecular Function | Biological Process

Computational Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
L-iditol 2-dehydrogenase activity IEA: Inferred from Electronic Annotation
with IUBMB:1.1.1.14
Last updated 2013-03-02
GOA curators and MGI curators  (2001) Gene Ontology annotation based on Enzyme Commission mapping. UniProtKB
metal ion binding IEA: Inferred from Electronic Annotation
with EBI:KW-0479
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
nucleotide binding IEA: Inferred from Electronic Annotation
with EBI:IPR016040
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
oxidoreductase activity IEA: Inferred from Electronic Annotation
with EBI:IPR013154, EBI:IPR002328, EBI:IPR013149, EBI:IPR002085
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
IEA: Inferred from Electronic Annotation
with EBI:KW-0560
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
zinc ion binding IEA: Inferred from Electronic Annotation
with EBI:IPR002328, EBI:IPR013149, EBI:IPR002085
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro

Computational Biological Process
Annotation(s) Evidence Reference(s) Assigned By
oxidation-reduction process IEA: Inferred from Electronic Annotation
with EBI:IPR013154, EBI:IPR002328, EBI:IPR013149, EBI:IPR002085
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
IEA: Inferred from Electronic Annotation
with EBI:KW-0560
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB

*** Computational GO Annotations are predictions. These annotations are NOT reviewed by a curator. Currently, all computational GO annotations for S. cerevisiae are assigned by an external source (for example, the Gene Ontology Annotation (GOA) project of the European Bioinformatics Institute (EBI)).