RCK1/YGL158W Gene Ontology Annotations Help

This page displays GO annotations in different sections according to the annotation method used to add that annotation to SGD.

RCK1 Manually curated*:

Last Reviewed on: 2002-10-08    Molecular Function | Biological Process | Cellular Component

Manually curated Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
protein serine/threonine kinase activity ISS: Inferred from Sequence or structural Similarity
Assigned on 2002-10-08
Ramne A, et al.  (2000) The protein kinases Rck1 and Rck2 inhibit meiosis in budding yeast. Mol Gen Genet 263(2):253-61 SGD

Manually curated Biological Process
Annotation(s) Evidence Reference(s) Assigned By
protein phosphorylation ISS: Inferred from Sequence or structural Similarity
Assigned on 2002-10-08
Ramne A, et al.  (2000) The protein kinases Rck1 and Rck2 inhibit meiosis in budding yeast. Mol Gen Genet 263(2):253-61 SGD
regulation of meiosis IGI: Inferred from Genetic Interaction
Assigned on 2002-10-08
IMP: Inferred from Mutant Phenotype
Assigned on 2002-10-08
Ramne A, et al.  (2000) The protein kinases Rck1 and Rck2 inhibit meiosis in budding yeast. Mol Gen Genet 263(2):253-61 SGD

Manually curated Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
cellular_component
unknown
ND: No Biological Data Available
Assigned on 2002-10-08
SGD  (2002) Use of the ND evidence code for Gene Ontology (GO) terms in SGD () SGD

* Manually curated GO annotations reflect our best understanding of the basic molecular function, biological process, and cellular component for this gene product. Manually curated annotations are assigned by SGD curators based on published papers when available, or by curatorial statements if necessary. Curators periodically review all Manually curated GO annotations for accuracy and completeness. The "Last Reviewed on:" date at the top of this section indicates when these annotations were last reviewed.


RCK1 High-throughput**:

Molecular Function | Biological Process

High-throughput Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
protein kinase activity IDA: Inferred from Direct Assay
Assigned on 2012-05-04
Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD

High-throughput Biological Process
Annotation(s) Evidence Reference(s) Assigned By
protein phosphorylation IDA: Inferred from Direct Assay
Assigned on 2012-05-04
Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 SGD

** GO annotations from High-throughput experiments are made based on a variety of large scale high-throughput experiments, including genome-wide experiments. Many of these annotations are made based on GO annotations (or mappings to GO annotations) assigned by the authors, rather than SGD curators. While SGD curators read these publications and often work closely with authors to incorporate the information, each individual annotation may not necessarily be reviewed by a curator. GO Annotations from high-throughput experiments will be assigned only when this type of data is available, and thus may not be assigned in all three aspects of the Gene Ontologies.


RCK1 Computational***:

Molecular Function | Biological Process

Computational Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
ATP binding IEA: Inferred from Electronic Annotation
with EBI:IPR017441, EBI:IPR000719, EBI:IPR002290
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
IEA: Inferred from Electronic Annotation
with EBI:KW-0067
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
calmodulin binding IEA: Inferred from Electronic Annotation
with EBI:KW-0112
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
kinase activity IEA: Inferred from Electronic Annotation
with EBI:KW-0418
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
nucleotide binding IEA: Inferred from Electronic Annotation
with EBI:KW-0547
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
protein kinase activity IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
protein serine/threonine kinase activity IEA: Inferred from Electronic Annotation
with EBI:IPR008271
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
IEA: Inferred from Electronic Annotation
with EBI:KW-0723
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
transferase activity IEA: Inferred from Electronic Annotation
with EBI:KW-0808
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
transferase activity, transferring phosphorus-containing groups IEA: Inferred from Electronic Annotation
with EBI:IPR011009
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro

Computational Biological Process
Annotation(s) Evidence Reference(s) Assigned By
phosphorylation IEA: Inferred from Electronic Annotation
with EBI:KW-0418
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
protein phosphorylation IEA: Inferred from Electronic Annotation
with EBI:IPR000719, EBI:IPR002290, EBI:IPR008271
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro

*** Computational GO Annotations are predictions. These annotations are NOT reviewed by a curator. Currently, all computational GO annotations for S. cerevisiae are assigned by an external source (for example, the Gene Ontology Annotation (GOA) project of the European Bioinformatics Institute (EBI)).