SHE2/YKL130C Gene Ontology Annotations Help

This page displays GO annotations in different sections according to the annotation method used to add that annotation to SGD.

SHE2 Manually curated*:

Last Reviewed on: 2002-10-01    Molecular Function | Biological Process | Cellular Component

Manually curated Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
mRNA binding IDA: Inferred from Direct Assay
Assigned on 2002-08-04
Long RM, et al.  (2000) She2p is a novel RNA-binding protein that recruits the Myo4p-She3p complex to ASH1 mRNA. EMBO J 19(23):6592-601 SGD

Manually curated Biological Process
Annotation(s) Evidence Reference(s) Assigned By
intracellular mRNA localization IDA: Inferred from Direct Assay
Assigned on 2002-08-04
Bohl F, et al.  (2000) She2p, a novel RNA-binding protein tethers ASH1 mRNA to the Myo4p myosin motor via She3p. EMBO J 19(20):5514-24 SGD
mating type switching IMP: Inferred from Mutant Phenotype
Assigned on 2008-03-31
Jansen RP, et al.  (1996) Mother cell-specific HO expression in budding yeast depends on the unconventional myosin myo4p and other cytoplasmic proteins. Cell 84(5):687-97 SGD

Manually curated Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
cellular bud tip IDA: Inferred from Direct Assay
Assigned on 2008-07-21
Bohl F, et al.  (2000) She2p, a novel RNA-binding protein tethers ASH1 mRNA to the Myo4p myosin motor via She3p. EMBO J 19(20):5514-24 SGD
cytoplasm IDA: Inferred from Direct Assay
Assigned on 2002-10-01
Jansen RP, et al.  (1996) Mother cell-specific HO expression in budding yeast depends on the unconventional myosin myo4p and other cytoplasmic proteins. Cell 84(5):687-97 SGD

* Manually curated GO annotations reflect our best understanding of the basic molecular function, biological process, and cellular component for this gene product. Manually curated annotations are assigned by SGD curators based on published papers when available, or by curatorial statements if necessary. Curators periodically review all Manually curated GO annotations for accuracy and completeness. The "Last Reviewed on:" date at the top of this section indicates when these annotations were last reviewed.


SHE2 High-throughput**:


There are no High-throughput annotations for SHE2

** GO annotations from High-throughput experiments are made based on a variety of large scale high-throughput experiments, including genome-wide experiments. Many of these annotations are made based on GO annotations (or mappings to GO annotations) assigned by the authors, rather than SGD curators. While SGD curators read these publications and often work closely with authors to incorporate the information, each individual annotation may not necessarily be reviewed by a curator. GO Annotations from high-throughput experiments will be assigned only when this type of data is available, and thus may not be assigned in all three aspects of the Gene Ontologies.


SHE2 Computational***:

Molecular Function | Biological Process | Cellular Component

Computational Molecular Function
Annotation(s) Evidence Reference(s) Assigned By
RNA binding IEA: Inferred from Electronic Annotation
with EBI:IPR024261
Last updated 2013-03-02
DDB, et al.  (2001) Gene Ontology annotation through association of InterPro records with GO terms. InterPro
IEA: Inferred from Electronic Annotation
with EBI:KW-0694
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB

Computational Biological Process
Annotation(s) Evidence Reference(s) Assigned By
mRNA transport IEA: Inferred from Electronic Annotation
with EBI:KW-0509
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
transport IEA: Inferred from Electronic Annotation
with EBI:KW-0813
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB

Computational Cellular Component
Annotation(s) Evidence Reference(s) Assigned By
cytoplasm IEA: Inferred from Electronic Annotation
with EBI:SL-0086
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. UniProtKB
IEA: Inferred from Electronic Annotation
with EBI:KW-0963
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB
nucleolus IEA: Inferred from Electronic Annotation
with EBI:SL-0188
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. UniProtKB
nucleus IEA: Inferred from Electronic Annotation
with EBI:SL-0191
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. UniProtKB
IEA: Inferred from Electronic Annotation
with EBI:KW-0539
Last updated 2013-03-02
UniProt-GOA  (2011) Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. UniProtKB

*** Computational GO Annotations are predictions. These annotations are NOT reviewed by a curator. Currently, all computational GO annotations for S. cerevisiae are assigned by an external source (for example, the Gene Ontology Annotation (GOA) project of the European Bioinformatics Institute (EBI)).