Genome-wide Analysis papers Help


Citation Topic(s)
Andrews SS  (2012) Spatial and stochastic cellular modeling with the smoldyn simulator. Methods Mol Biol 804():519-42 Computational analysis
Baller JA, et al.  (2012) A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon. Genome Res () Other genomic analysis
Bandyopadhyay N, et al.  (2012) Sslpred: predicting synthetic sickness lethality. Pac Symp Biocomput ():7-18 Computational analysis
Blackman RK, et al.  (2012) Mitochondrial electron transport is the cellular target of the oncology drug elesclomol. PLoS One 7(1):e29798 Large-scale phenotype analysis
Chen MJ, et al.  (2012) De novo motif discovery facilitates identification of interactions between transcription factors in Saccharomyces cerevisiae. Bioinformatics () Computational analysis
Davidson MB, et al.  (2012) Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype.LID - 10.1038/emboj.2011.485 [doi] EMBO J () Comparative genomic hybridization
Francis MR and Fertig EJ  (2012) Quantifying the dynamics of coupled networks of switches and oscillators. PLoS One 7(1):e29497 Computational analysis
Freire P, et al.  (2012) Interplay of transcriptional and proteolytic regulation in driving robust cell cycle progression. Mol Biosyst () Computational analysis
Gomez-Pastor R, et al.  (2012) Modification of the TRX2 gene dose in Saccharomyces cerevisiae affects hexokinase 2 gene regulation during wine yeast biomass production. Appl Microbiol Biotechnol () Genomic expression study
Jakoby T, et al.  (2012) Quantitative protease cleavage site profiling using Tandem-Mass-Tag labeling and LC-MALDI-TOF/TOF MS/MS analysis. J Proteome Res () Large-scale protein modification
Klann M, et al.  (2012) Spatial modeling of vesicle transport and the cytoskeleton: the challenge of hitting the right road. PLoS One 7(1):e29645 Computational analysis
Mahmud SA, et al.  (2012) Understanding the mechanism of heat stress tolerance caused by high trehalose accumulation in Saccharomyces cerevisiae using DNA microarray. J Biosci Bioeng () Genomic expression study
Pascual-Ahuir A and Proft M  (2012) Quantification of Protein-DNA Interactions by In Vivo Chromatin Immunoprecipitation in Yeast. Methods Mol Biol 809():149-56 Genomic co-immunoprecipitation study
Pedone F and Santoni D  (2012) Preferential Nucleosome Occupancy at High Values of DNA Helical Rise. DNA Res () Computational analysis
Pir P, et al.  (2012) The genetic control of growth rate: a systems biology study in yeast. BMC Syst Biol 6(1):4 Large-scale phenotype analysis
Pultz D, et al.  (2012) Global mapping of protein phosphorylation events identifies Ste20, Sch9 and the cell-cycle regulatory kinases Cdc28/Pho85 as mediators of fatty acid starvation responses in Saccharomyces cerevisiae. Mol Biosyst () Computational analysis , Large-scale protein detection
Rashidi A, et al.  (2012) EvolutionEvolution of Asymmetric Damagedamage Segregationsegregation: A Modelling Approach. Subcell Biochem 57():315-30 Computational analysis
Rincon Hidalgo MM and Ruiz-Medina MD  (2012) Local wavelet-vaguelette-based functional classification of gene expression data. Biom J 54(1):75-93 Computational analysis
Wyrick JJ  (2012) Computational analysis of promoter elements and chromatin features in yeast. Methods Mol Biol 809():217-35 Computational analysis
Zur H and Tuller T  (2012) Strong association between mRNA folding strength and protein abundance in S. cerevisiae.LID - 10.1038/embor.2011.262 [doi] EMBO Rep () Computational analysis
de Kok S, et al.  (2012) Laboratory evolution of new lactate transporter genes in a jen1Delta mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and transcriptome analysis.LID - 10.1111/j.1567-1364.2011.00787.x [doi] FEMS Yeast Res () Other genomic analysis
de Kok S, et al.  (2012) Laboratory evolution of new lactate transporter genes in a jen1Delta mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and transcriptome analysis.LID - 10.1111/j.1567-1364.2012.00787.x [doi] FEMS Yeast Res () Genomic expression study , Other genomic analysis
di Bernardo D, et al.  (2012) Predicting synthetic gene networks. Methods Mol Biol 813():57-81 Computational analysis
Achcar F, et al.  (2011) A Boolean probabilistic model of metabolic adaptation to oxygen in relation to iron homeostasis and oxidative stress. BMC Syst Biol 5(1):51 Computational analysis
Addinall SG, et al.  (2011) Quantitative Fitness Analysis Shows That NMD Proteins and Many Other Protein Complexes Suppress or Enhance Distinct Telomere Cap Defects. PLoS Genet 7(4):e1001362 Large-scale genetic interaction
Adrover MA, et al.  (2011) Time-Dependent Quantitative Multicomponent Control of the G1-S Network by the Stress-Activated Protein Kinase Hog1 upon Osmostress. Sci Signal 4(192):ra63 Computational analysis
Afek A, et al.  (2011) Nonspecific Transcription-Factor-DNA Binding Influences Nucleosome Occupancy in Yeast. Biophys J 101(10):2465-75 Computational analysis
Agbor TA, et al.  (2011) Small Ubiquitin-related Modifier (SUMO)-1 Promotes Glycolysis in Hypoxia. J Biol Chem 286(6):4718-26 Large-scale protein modification
Aggarwal P, et al.  (2011) The TCP4 transcription factor of Arabidopsis blocks cell division in yeast at G1-->S transition. Biochem Biophys Res Commun () Genomic expression study
Agier N and Fischer G  (2011) The mutational profile of the yeast genome is shaped by replication. Mol Biol Evol () Other genomic analysis