Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Andrews SS (2012) Spatial and stochastic cellular modeling with the smoldyn simulator. Methods Mol Biol 804():519-42 | Computational analysis |
| Baller JA, et al. (2012) A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon. Genome Res () | Other genomic analysis |
| Bandyopadhyay N, et al. (2012) Sslpred: predicting synthetic sickness lethality. Pac Symp Biocomput ():7-18 | Computational analysis |
| Blackman RK, et al. (2012) Mitochondrial electron transport is the cellular target of the oncology drug elesclomol. PLoS One 7(1):e29798 | Large-scale phenotype analysis |
| Chen MJ, et al. (2012) De novo motif discovery facilitates identification of interactions between transcription factors in Saccharomyces cerevisiae. Bioinformatics () | Computational analysis |
| Davidson MB, et al. (2012) Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype.LID - 10.1038/emboj.2011.485 [doi] EMBO J () | Comparative genomic hybridization |
| Francis MR and Fertig EJ (2012) Quantifying the dynamics of coupled networks of switches and oscillators. PLoS One 7(1):e29497 | Computational analysis |
| Freire P, et al. (2012) Interplay of transcriptional and proteolytic regulation in driving robust cell cycle progression. Mol Biosyst () | Computational analysis |
| Gomez-Pastor R, et al. (2012) Modification of the TRX2 gene dose in Saccharomyces cerevisiae affects hexokinase 2 gene regulation during wine yeast biomass production. Appl Microbiol Biotechnol () | Genomic expression study |
| Jakoby T, et al. (2012) Quantitative protease cleavage site profiling using Tandem-Mass-Tag labeling and LC-MALDI-TOF/TOF MS/MS analysis. J Proteome Res () | Large-scale protein modification |
| Klann M, et al. (2012) Spatial modeling of vesicle transport and the cytoskeleton: the challenge of hitting the right road. PLoS One 7(1):e29645 | Computational analysis |
| Mahmud SA, et al. (2012) Understanding the mechanism of heat stress tolerance caused by high trehalose accumulation in Saccharomyces cerevisiae using DNA microarray. J Biosci Bioeng () | Genomic expression study |
| Pascual-Ahuir A and Proft M (2012) Quantification of Protein-DNA Interactions by In Vivo Chromatin Immunoprecipitation in Yeast. Methods Mol Biol 809():149-56 | Genomic co-immunoprecipitation study |
| Pedone F and Santoni D (2012) Preferential Nucleosome Occupancy at High Values of DNA Helical Rise. DNA Res () | Computational analysis |
| Pir P, et al. (2012) The genetic control of growth rate: a systems biology study in yeast. BMC Syst Biol 6(1):4 | Large-scale phenotype analysis |
| Pultz D, et al. (2012) Global mapping of protein phosphorylation events identifies Ste20, Sch9 and the cell-cycle regulatory kinases Cdc28/Pho85 as mediators of fatty acid starvation responses in Saccharomyces cerevisiae. Mol Biosyst () | Computational analysis , Large-scale protein detection |
| Rashidi A, et al. (2012) EvolutionEvolution of Asymmetric Damagedamage Segregationsegregation: A Modelling Approach. Subcell Biochem 57():315-30 | Computational analysis |
| Rincon Hidalgo MM and Ruiz-Medina MD (2012) Local wavelet-vaguelette-based functional classification of gene expression data. Biom J 54(1):75-93 | Computational analysis |
| Wyrick JJ (2012) Computational analysis of promoter elements and chromatin features in yeast. Methods Mol Biol 809():217-35 | Computational analysis |
| Zur H and Tuller T (2012) Strong association between mRNA folding strength and protein abundance in S. cerevisiae.LID - 10.1038/embor.2011.262 [doi] EMBO Rep () | Computational analysis |
| de Kok S, et al. (2012) Laboratory evolution of new lactate transporter genes in a jen1Delta mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and transcriptome analysis.LID - 10.1111/j.1567-1364.2011.00787.x [doi] FEMS Yeast Res () | Other genomic analysis |
| de Kok S, et al. (2012) Laboratory evolution of new lactate transporter genes in a jen1Delta mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and transcriptome analysis.LID - 10.1111/j.1567-1364.2012.00787.x [doi] FEMS Yeast Res () | Genomic expression study , Other genomic analysis |
| di Bernardo D, et al. (2012) Predicting synthetic gene networks. Methods Mol Biol 813():57-81 | Computational analysis |
| Achcar F, et al. (2011) A Boolean probabilistic model of metabolic adaptation to oxygen in relation to iron homeostasis and oxidative stress. BMC Syst Biol 5(1):51 | Computational analysis |
| Addinall SG, et al. (2011) Quantitative Fitness Analysis Shows That NMD Proteins and Many Other Protein Complexes Suppress or Enhance Distinct Telomere Cap Defects. PLoS Genet 7(4):e1001362 | Large-scale genetic interaction |
| Adrover MA, et al. (2011) Time-Dependent Quantitative Multicomponent Control of the G1-S Network by the Stress-Activated Protein Kinase Hog1 upon Osmostress. Sci Signal 4(192):ra63 | Computational analysis |
| Afek A, et al. (2011) Nonspecific Transcription-Factor-DNA Binding Influences Nucleosome Occupancy in Yeast. Biophys J 101(10):2465-75 | Computational analysis |
| Agbor TA, et al. (2011) Small Ubiquitin-related Modifier (SUMO)-1 Promotes Glycolysis in Hypoxia. J Biol Chem 286(6):4718-26 | Large-scale protein modification |
| Aggarwal P, et al. (2011) The TCP4 transcription factor of Arabidopsis blocks cell division in yeast at G1-->S transition. Biochem Biophys Res Commun () | Genomic expression study |
| Agier N and Fischer G (2011) The mutational profile of the yeast genome is shaped by replication. Mol Biol Evol () | Other genomic analysis |
