Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Abascal F, et al. (2008) ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data. Bioinformatics 24(9):1208-9 | Computational analysis |
| Abe F and Minegishi H (2008) Global screening of genes essential for growth in high-pressure and cold environments: searching for basic adaptive strategies using a yeast deletion library. Genetics 178(2):851-72 | Large-scale phenotype analysis |
| Agarwal AK, et al. (2008) Role of heme in the antifungal activity of the azaoxoaporphine alkaloid sampangine. Eukaryot Cell 7(2):387-400 | Genomic expression study |
| Alber F, et al. (2008) Integrating Diverse Data for Structure Determination of Macromolecular Assemblies. Annu Rev Biochem | Computational analysis |
| Almeida T, et al. (2008) Isc1p Plays a Key Role in Hydrogen Peroxide Resistance and Chronological Lifespan through Modulation of Iron Levels and Apoptosis. Mol Biol Cell 19(3):865-876 | Genomic expression study |
| Amaro IA, et al. (2008) The Saccharomyces cerevisiae Homolog of p24 Is Essential for Maintaining the Association of p150Glued With the Dynactin Complex. Genetics 178(2):703-9 | Large-scale genetic interaction |
| Ansel J, et al. (2008) Cell-to-Cell Stochastic Variation in Gene Expression Is a Complex Genetic Trait. PLoS Genet 4(4):e1000049 | Other genomic analysis |
| Bandhakavi S, et al. (2008) Hsf1 Activation Inhibits Rapamycin Resistance and TOR Signaling in Yeast Revealed by Combined Proteomic and Genetic Analysis. PLoS ONE 3(2):e1598 | Large-scale protein detection |
| Banerjee D, et al. (2008) Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks. Eukaryot Cell 7(1):68-77 | Computational analysis, Genomic expression study |
| Barrales RR, et al. (2008) Identification of Novel Activation Mechanisms for FLO11 Regulation in Saccharomyces cerevisiae. Genetics 178(1):145-56 | Large-scale phenotype analysis |
| Boscolo R, et al. (2008) An information theoretic exploratory method for learning patterns of conditional gene coexpression from microarray data. IEEE/ACM Trans Comput Biol Bioinform 5(1):15-24 | Computational analysis |
| Bowers JJ, et al. (2008) Protein identification via ion-trap collision-induced dissociation and examination of low-mass product ions. J Mass Spectrom 43(1):23-34 | Large-scale protein detection |
| Brauer MJ, et al. (2008) Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. Mol Biol Cell 19(1):352-67 | Genomic expression study |
| Calvert ME, et al. (2008) Phosphorylation by casein kinase 2 regulates Nap1 localization and function. Mol Cell Biol 28(4):1313-25 | Large-scale protein interaction |
| Casimiro AC, et al. (2008) An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance. BMC Bioinformatics 9:89 | Computational analysis |
| Castillo L, et al. (2008) Genomic response programs of Saccharomyces cerevisiae following protoplasting and regeneration. Fungal Genet Biol 45(3):253-65 | Genomic expression study |
| Chamilos G, et al. (2008) Genomewide Screening for Genes Associated with Gliotoxin Resistance and Sensitivity in Saccharomyces cerevisiae. Antimicrob Agents Chemother 52(4):1325-9 | Large-scale phenotype analysis |
| Chen CY, et al. (2008) Discovering gapped binding sites of yeast transcription factors. Proc Natl Acad Sci U S A 105(7):2527-32 | Computational analysis |
| Cheng C and Li LM (2008) Systematic identification of cell cycle regulated transcription factors from microarray time series data. BMC Genomics 9:116 | Computational analysis |
| Cheraiti N, et al. (2008) Acetaldehyde addition throughout the growth phase alleviates the phenotypic effect of zinc deficiency in Saccharomyces cerevisiae. Appl Microbiol Biotechnol 77(5):1093-1109 | Genomic expression study, Large-scale protein detection |
| Cipollina C, et al. (2008) Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study. Microbiology 154(Pt 1):337-46 | Genomic expression study |
| Conti S, et al. (2008) Screening of a Saccharomyces cerevisiae nonessential gene deletion collection for altered susceptibility to a killer peptide. New Microbiol 31(1):143-5 | Large-scale phenotype analysis |
| Cui Y, et al. (2008) Genome wide expression analysis of the CCR4-NOT complex indicates that it consists of three modules with the NOT module controlling SAGA-responsive genes. Mol Genet Genomics 279(4):323-37 | Genomic expression study |
| Daigle BJ Jr and Altman RB (2008) M-BISON: microarray-based integration of data sources using networks. BMC Bioinformatics 9(1):214 | Computational analysis |
| Darst RP, et al. (2008) Slx5 promotes transcriptional silencing and is required for robust growth in the absence of Sir2. Mol Cell Biol 28(4):1361-72 | Genomic co-immunoprecipitation study |
| Decourty L, et al. (2008) Linking functionally related genes by sensitive and quantitative characterization of genetic interaction profiles. Proc Natl Acad Sci U S A 105(15):5821-6 | Large-scale genetic interaction |
| Del Vescovo V, et al. (2008) Role of Hog1 and Yaf9 in the transcriptional response of Saccharomyces cerevisiae to cesium chloride. Physiol Genomics 33(1):110-20 | Genomic expression study |
| Delneri D, et al. (2008) Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures. Nat Genet 40(1):113-7 | Large-scale phenotype analysis |
| Demczuk A, et al. (2008) Yeast Phospholipase C Regulates Transcription of Msn2p-Dependent Stress Responsive Genes. Eukaryot Cell | Genomic expression study |
| Dilda PJ, et al. (2008) Insight into the selectivity of arsenic trioxide for acute promyelocytic leukemia cells by characterizing Saccharomyces cerevisiae deletion strains that are sensitive or resistant to the metalloid. Int J Biochem Cell Biol 40(5):1016-29 | Large-scale phenotype analysis |
