Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Abe H, et al. (2009) Upregulation of genes involved in gluconeogenesis and the glyoxylate cycle suppressed the drug sensitivity of an N-glycan-deficient Saccharomyces cerevisiae mutant. Biosci Biotechnol Biochem 73(6):1398-403 | Genomic expression study |
| Acencio ML and Lemke N (2009) Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information. BMC Bioinformatics 10:290 | Computational analysis |
| Adachi M and Cavalcanti AR (2009) Tandem stop codons in ciliates that reassign stop codons. J Mol Evol 68(4):424-31 | Other genomic analysis |
| Airoldi EM, et al. (2009) Predicting cellular growth from gene expression signatures. PLoS Comput Biol 5(1):e1000257 | Computational analysis |
| Akerborg O, et al. (2009) Simultaneous Bayesian gene tree reconstruction and reconciliation analysis. Proc Natl Acad Sci U S A 106(14):5714-9 | Computational analysis |
| Alberghina L, et al. (2009) Systems biology of the cell cycle of Saccharomyces cerevisiae: From network mining to system-level properties. Biotechnol Adv 27(6):960-78 | Computational analysis |
| Alberti S, et al. (2009) A systematic survey identifies prions and illuminates sequence features of prionogenic proteins. Cell 137(1):146-58 | Computational analysis |
| Alejandro-Osorio AL, et al. (2009) The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress. Genome Biol 10(5):R57 | Genomic expression study |
| Ammar R, et al. (2009) A comparative analysis of DNA barcode microarray feature size. BMC Genomics 10:471 | Comparative genomic hybridization |
| Anand VC, et al. (2009) Genome-wide analysis of AP-3-dependent protein transport in yeast. Mol Biol Cell 20(5):1592-604 | Large-scale phenotype analysis |
| Anderson JB, et al. (2009) Gene expression and evolution of antifungal drug resistance. Antimicrob Agents Chemother 53(5):1931-6 | Genomic expression study |
| Anton-Leberre V, et al. (2009) Exposure to high static or pulsed magnetic fields does not affect cellular processes in the yeast Saccharomyces cerevisiae. Bioelectromagnetics | Genomic expression study , Large-scale protein detection |
| Arnaud MB, et al. (2009) Gene Ontology and the annotation of pathogen genomes: the case of Candida albicans. Trends Microbiol 17(7):295-303 | Computational analysis |
| Arnesen T, et al. (2009) Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans. Proc Natl Acad Sci U S A 106(20):8157-62 | Large-scale protein modification |
| Asadollahi MA, et al. (2009) Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering. Metab Eng | Computational analysis |
| Auesukaree C, et al. (2009) Genome-wide identification of genes involved in tolerance to various environmental stresses in Saccharomyces cerevisiae. J Appl Genet 50(3):301-310 | Large-scale phenotype analysis |
| Azzouz N, et al. (2009) Specific roles for the Ccr4-Not complex subunits in expression of the genome. RNA 15(3):377-83 | Genomic expression study |
| Bachman P and Liu Y (2009) Structure discovery in PPI networks using pattern-based network decomposition. Bioinformatics 25(14):1814-1821 | Computational analysis |
| Baldwin M, et al. (2009) Analyzing top2 distribution on yeast chromosomes by chromatin immunoprecipitation. Methods Mol Biol 582:119-30 | Genomic co-immunoprecipitation study |
| Bando M, et al. (2009) Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks. J Biol Chem | Genomic co-immunoprecipitation study |
| Banumathy G, et al. (2009) Human UBN1 is an ortholog of yeast Hpc2p and has an essential role in the HIRA/ASF1a chromatin-remodeling pathway in senescent cells. Mol Cell Biol 29(3):758-70 | Computational analysis |
| Barea F and Bonatto D (2009) Aging defined by a chronologic-replicative protein network in Saccharomyces cerevisiae: an interactome analysis. Mech Ageing Dev 130(7):444-60 | Computational analysis |
| Basu A, et al. (2009) Proteome-wide prediction of acetylation substrates. Proc Natl Acad Sci U S A 106(33):13785-90 | Computational analysis |
| Baudouin-Cornu P, et al. (2009) Development of a new method for absolute protein quantification on 2-D gels. Proteomics | Large-scale protein detection , Other large-scale proteomic analysis |
| Belloch C, et al. (2009) Chimeric genomes of natural hybrids of Saccharomyces cerevisiae and Saccharomyces kudriavzevii. Appl Environ Microbiol 75(8):2534-44 | Comparative genomic hybridization |
| Benbadis L, et al. (2009) Isolation of two cell populations from yeast during high-level alcoholic fermentation that resemble quiescent and nonquiescent cells from the stationary phase on glucose. FEMS Yeast Res | Genomic expression study |
| Bhardwaj N and Lu H (2009) Co-expression among constituents of a motif in the protein-protein interaction network. J Bioinform Comput Biol 7(1):1-17 | Computational analysis |
| Bhattacharjee A, et al. (2009) In vivo protein tyrosine nitration in S. cerevisiae: Identification of tyrosine-nitrated proteins in mitochondria. Biochem Biophys Res Commun 388(3):612-7 | Large-scale protein modification |
| Bi X, et al. (2009) The global gene expression profile of the model fungus Saccharomyces cerevisiae induced by thymol. J Appl Microbiol | Genomic expression study |
| Bianconi G, et al. (2009) Assessing the relevance of node features for network structure. Proc Natl Acad Sci U S A 106(28):11433-8 | Computational analysis |
