What's New In SGD in 2008?

New Summary Paragraphs - December 16, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: CTK1/YKL139W , CTK2/YJL006C , CTK3/YML112W , and TDH3/YGR192C .

GO Annotation Information - December 16, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  AAC3/YBR085W	ADP1/YCR011C	ADY2/YCR010C	AGP1/YCL025C	AGP2/YBR132C
  BAP2/YBR068C	CSM4/YPL200W	CTP1/YBR291C	DAS2/YDR020C	DET1/YDR051C
  DMR1/YGR150C	DTR1/YBR180W	ECM38/YLR299W	ENA1/YDR040C	ENA2/YDR039C
  ENA5/YDR038C	ERS1/YCR075C	GGC1/YDL198C	GIT1/YCR098C	HXT15/YDL245C
  MAL31/YBR298C	MPH2/YDL247W	NDJ1/YOL104C	PCA1/YBR295W	PHO87/YCR037C
  PHO89/YBR296C	PIF1/YML061C	QDR3/YBR043C	RIM2/YBR192W	RMI1/YPL024W
  RPS13/YDR064W	RPS14B/YJL191W	RPS2/YGL123W	SEC2/YNL272C	SUL1/YBR294W
  TAT1/YBR069C	TOP3/YLR234W	UGA4/YDL210W	URN1/YPR152C	VBA2/YBR293W
  VBA3/YCL069W	VCX1/YDL128W	VIP1/YLR410W	VMA2/YBR127C	VMA9/YCL005W-A
  VPS36/YLR417W	YMC2/YBR104W	YBR235W	YBR241C	YDL199C
  YGR283C	YKL069W	YMR310C

New Summary Paragraphs - December 9, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: FPR1/YNL135C .

GO Annotation Information - December 9, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  BNI1/YNL271C	BNR1/YIL159W	DRS2/YAL026C	EXO1/YOR033C	FRS1/YLR060W
  FRS2/YFL022C	FUN19/YAL034C	FUN26/YAL022C	HRD1/YOL013C	ILS1/YBL076C
  IRE1/YHR079C	MAL21	MAL41	MAL61	MID2/YLR332W
  MSF1/YPR047W	MSH3/YCR092C	MST1/YKL194C	MSW1/YDR268W	NMA111/YNL123W
  RPL30/YGL030W	RPS10A/YOR293W	RPS10B/YMR230W	RPS14A/YCR031C	RPS14B/YJL191W
  RPS15/YOL040C	RPS16A/YMR143W	RPS16B/YDL083C	RPS17A/YML024W	RPS17B/YDR447C
  RPS18A/YDR450W	RPS18B/YML026C	RPS1A/YLR441C	RPS1B/YML063W	RPS2/YGL123W
  RPS24A/YER074W	RPS24B/YIL069C	RPS26A/YGL189C	RPS26B/YER131W	RPS30A/YLR287C-A
  RPS30B/YOR182C	RPS31/YLR167W	RPS5/YJR123W	RPS7A/YOR096W	RPS7B/YNL096C
  SAE2/YGL175C	SDH1/YKL148C	SDH2/YLL041C	SDH3/YKL141W	SGS1/YMR190C
  SLT2/YHR030C	SNF1/YDR477W	SRY1/YKL218C	SWI6/YLR182W	UBC7/YMR022W
  VAS1/YGR094W	VOA1/YGR106C	YPR1/YDR368W	YER156C	YGL082W
  YGL157W	YPL191C

GO Annotation Information - November 25, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  AEP2/YMR282C	ALA1/YOR335C	CDC33/YOL139C	DHH1/YDL160C	EAP1/YKL204W
  EDC3/YEL015W	GBP2/YCL011C	HCM1/YCR065W	HRP1/YOL123W	IFM1/YOL023W
  IMG1/YCR046C	ISM1/YPL040C	LSM4/YER112W	MEF1/YLR069C	MRP10/YDL045W-A
  MRP20/YDR405W	MRP21/YBL090W	MRP51/YPL118W	MRPL10/YNL284C	MRPL11/YDL202W
  MRPL13/YKR006C	MRPL16/YBL038W	MRPL19/YNL185C	MRPL20/YKR085C	MRPL24/YMR193W
  MRPL28/YDR462W	MRPL32/YCR003W	MRPL33/YMR286W	MRPL37/YBR268W	MRPL39/YML009C
  MRPL44/YMR225C	MRPL7/YDR237W	MRPS18/YNL306W	MSD1/YPL104W	MSE1/YOL033W
  MSK1/YNL073W	MSR1/YHR091C	NGR1/YBR212W	NRP1/YDL167C	NUR1/YDL089W
  PAB1/YER165W	PAT1/YCR077C	PBP1/YGR178C	PET112/YBL080C	PLM2/YDR501W
  POG1/YIL122W	PPN1/YDR452W	PUB1/YNL016W	SRC1/YML034W	SUC7
  SWI4/YER111C	TAF14/YPL129W	TIF4631/YGR162W	TIF4632/YGL049C	TOS4/YLR183C
  TOS8/YGL096W	TYE7/YOR344C	YAP5/YIR018W	YHP1/YDR451C	YML6/YML025C
  YOX1/YML027W	YGR250C

GO Annotation Information - November 18, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  DBP3/YGL078C	GAL3/YDR009W	GRX6/YDL010W	GRX7/YBR014C	HCA4/YJL033W
  IGO1/YNL157W	IGO2/YHR132W-A	MRP1/YDR347W	MRP13/YGR084C	MRP17/YKL003C
  MRP2/YPR166C	MRP4/YHL004W	MRP51/YPL118W	MRP7/YNL005C	MRPL15/YLR312W-A
  MRPL17/YNL252C	MRPL20/YKR085C	MRPL23/YOR150W	MRPL25/YGR076C	MRPL27/YBR282W
  MRPL3/YMR024W	MRPL31/YKL138C	MRPL35/YDR322W	MRPL36/YBR122C	MRPL38/YKL170W
  MRPL40/YPL173W	MRPL49/YJL096W	MRPL50/YNR022C	MRPL6/YHR147C	MRPL8/YJL063C
  MRPS12/YNR036C	MRPS16/YPL013C	MRPS17/YMR188C	MRPS28/YDR337W	MRPS35/YGR165W
  MRPS5/YBR251W	MRPS8/YMR158W	MRPS9/YBR146W	NAM9/YNL137C	PET123/YOR158W
  PLM2/YDR501W	ROK1/YGL171W	RRP3/YHR065C	RSM10/YDR041W	RSM18/YER050C
  RSM19/YNR037C	RSM22/YKL155C	RSM23/YGL129C	RSM24/YDR175C	RSM25/YIL093C
  RSM26/YJR101W	RSM27/YGR215W	RSM7/YJR113C	RTC6/YPL183W-A	SUC1
  SUC3	SUC4	SUC5	SWS2/YNL081C	TOS4/YLR183C
  VAR1/Q0140	YNK1/YKL067W	YDR115W

GO Annotation Information - November 11, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  AIR1/YIL079C	AIR2/YDL175C	ALY1/YKR021W	ALY2/YJL084C	ARC18/YLR370C
  ARC40/YBR234C	ART5/YGR068C	CDC15/YAR019C	CSL4/YNL232W	CSM2/YIL132C
  CSR2/YPR030W	CTF18/YMR078C	DPB11/YJL090C	ECM21/YBL101C	FPK1/YNR047W
  LDB19/YOR322C	LIN1/YHR156C	MTR3/YGR158C	NOP8/YOL144W	PAP2/YOL115W
  PSY3/YLR376C	RAD4/YER162C	ROD1/YOR018W	ROG3/YFR022W	RRP42/YDL111C
  RRP43/YCR035C	RRP45/YDR280W	RRP46/YGR095C	RRP6/YOR001W	SHE1/YBL031W
  SHU1/YHL006C	SHU2/YDR078C	SKI3/YPR189W	SKI7/YOR076C	STB3/YDR169C
  STE14/YDR410C	STE24/YJR117W	TOR1/YJR066W

SGD Quarterly Newsletter - November 5, 2008

• SGD sends out its quarterly newsletter to colleagues designated as contacts in SGD. An HTML version of the newsletter is available. If you would like to receive this letter in the future please use the SGD Colleague Submission/Update form to let us know.

GO Annotation Information - November 4, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  BFR2/YDR299W	CTK1/YKL139W	CTK2/YJL006C	CTK3/YML112W	GEF1/YJR040W
  GPM1/YKL152C	MOD5/YOR274W	MRC1/YCL061C	MTC7/YEL033W	OCA5/YHL029C
  RKM1/YPL208W	RKM3/YBR030W	RPA190/YOR341W	RPB3/YIL021W	RSP5/YER125W
  SET7/YDR257C	SOH1/YGL127C	SPO16/YHR153C	SPO22/YIL073C	SUS1/YBR111W-A
  TEL2/YGR099W	ZDS1/YMR273C	ZDS2/YML109W	YCL057C-A	YDR109C
  YEL008W	YMR010W	YMR031W-A

GO Annotation Information - October 28, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ADD66/YKL206C	BUD16/YEL029C	BUD31/YCR063W	CUS1/YMR240C	HSH155/YMR288W
  HSH49/YOR319W	INO80/YGL150C	IST3/YIR005W	NMD3/YHR170W	ORC2/YBR060C
  RDS3/YPR094W	RMI1/YPL024W	RNA15/YGL044C	RSE1/YML049C	SLG1/YOR008C
  SNF2/YOR290C	SPP1/YPL138C	SSE1/YPL106C	SWA2/YDR320C	URE2/YNL229C
  YSF3/YNL138W-A	YUH1/YJR099W

New and Improved Textpresso - October 23, 2008

• The SGD full-text literature search capability (powered by Textpresso) has been upgraded and expanded to include publications from 2008. The full-text literature search can be accessed via the Full-text search link on the home page, from a link on the SGD Search Options contents page, and from any Search results page where the search form is prefilled with your search query. The new Textpresso is installed on the first of a series of new servers that are being rolled out at SGD over the next few weeks.

New links to FitDB - October 23, 2008

• Links to the Yeast Fitness Database (FitDB), a website to view fitness defects in mutant yeast strains in the presence of various chemicals, as described in Hillenmeyer, et al., have been added to the "Phenotype" pull-down menu on the Locus Summary and Phentoype Details pages. Thanks to Maureen Hillenmeyer, Larry Heisler, and Guri Giaever for helping set up these links.

New Summary Paragraphs - October 21, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: RAD9/YDR217C .

GO Annotation Information - October 21, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ATG9/YDL149W	BNA2/YJR078W	BTN2/YGR142W	BUD16/YEL029C	CBP1/YJL209W
  CMD1/YBR109C	CUR1/YPR158W	ESP1/YGR098C	FKH1/YIL131C	FKH2/YNL068C
  MCD1/YDL003W	PUF3/YLL013C	RAD9/YDR217C	ROK1/YGL171W	RPL31A/YDL075W
  RPL31B/YLR406C	RPS10A/YOR293W	RPS10B/YMR230W	RPS14B/YJL191W	RPS16A/YMR143W
  RPS16B/YDL083C	RPS19A/YOL121C	RPS19B/YNL302C	RPS21A/YKR057W	RPS21B/YJL136C
  RPS24A/YER074W	RPS24B/YIL069C	RPS26A/YGL189C	RPS26B/YER131W	RPS27A/YKL156W
  RPS27B/YHR021C	RPS28A/YOR167C	RPS28B/YLR264W	RSP5/YER125W	TGS1/YPL157W
  YER163C

GO Annotation Information - October 14, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ADY3/YDL239C	ARK1/YNL020C	CIA1/YDR267C	CIN8/YEL061C	DAP1/YPL170W
  DYN1/YKR054C	KIP1/YBL063W	LRP1/YHR081W	MGR1/YCL044C	MGR3/YMR115W
  NSE1/YLR007W	PAN1/YIR006C	PMA1/YGL008C	PRK1/YIL095W	RSP5/YER125W
  RTN1/YDR233C	RTN2/YDL204W	SKI6/YGR195W	YME1/YPR024W	YER163C

New Summary Paragraphs - October 7, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: YFH1/YDL120W .

GO Annotation Information - October 7, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ABC1/YGL119W	ACK1/YDL203C	BRN1/YBL097W	CRD1/YDL142C	CSL4/YNL232W
  DIS3/YOL021C	EFB1/YAL003W	ICE2/YIL090W	IRE1/YHR079C	KRI1/YNL308C
  KRR1/YCL059C	MTR3/YGR158C	MTR4/YJL050W	NQM1/YGR043C	RNT1/YMR239C
  RRP4/YHR069C	RRP40/YOL142W	RRP42/YDL111C	RRP43/YCR035C	RRP45/YDR280W
  RRP46/YGR095C	RRP6/YOR001W	SCS2/YER120W	SDH1/YKL148C	SDH2/YLL041C
  SKI2/YLR398C	SKI3/YPR189W	SKI6/YGR195W	SKI8/YGL213C	SMC2/YFR031C
  SMC4/YLR086W	SRM1/YGL097W	SWA2/YDR320C	TEF1/YPR080W	TEF2/YBR118W
  YCG1/YDR325W	YCS4/YLR272C	YFH1/YDL120W

GO Annotation Information - September 30, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ARP4/YJL081C	ATG18/YFR021W	ATG21/YPL100W	BEM3/YPL115C	CRF1/YDR223W
  DBF2/YGR092W	DNM1/YLL001W	FIS1/YIL065C	GCN2/YDR283C	HSV2/YGR223C
  IES6/YEL044W	MDM30/YLR368W	MPP6/YNR024W	MPS1/YDL028C	RCE1/YMR274C
  RFT1/YBL020W	RGA1/YOR127W	RGA2/YDR379W	RPN13/YLR421C	RPN14/YGL004C
  RPS13/YDR064W	RPS14A/YCR031C	RPS2/YGL123W	RPS20/YHL015W	RPS3/YNL178W
  RPS4A/YJR145C	RPS4B/YHR203C	RPS5/YJR123W	RPS6A/YPL090C	RPS6B/YBR181C
  RPS8A/YBL072C	RPS8B/YER102W	RPS9A/YPL081W	RPS9B/YBR189W	RRP40/YOL142W
  SDH1/YKL148C	SDH2/YLL041C	SDH3/YKL141W	SDH4/YDR178W	TFP1/YDL185W
  VMA2/YBR127C	VPH1/YOR270C	YKU70/YMR284W	YME1/YPR024W	YJL045W
  YKL151C	YLR414C

GO Annotation Information - September 23, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ADE12/YNL220W	ADE4/YMR300C	BRE2/YLR015W	BUB1/YGR188C	CDC13/YDL220C
  CTF18/YMR078C	DCC1/YCL016C	DIS3/YOL021C	ECM22/YLR228C	EST1/YLR233C
  EST3/YIL009C-A	MRC1/YCL061C	RPS0A/YGR214W	RPS0B/YLR048W	RPS11A/YDR025W
  RPS11B/YBR048W	RPS12/YOR369C	RPS22A/YJL190C	RPS22B/YLR367W	RPS23A/YGR118W
  RPS23B/YPR132W	RPS25A/YGR027C	RPS25B/YLR333C	RPS29A/YLR388W	RPS29B/YDL061C
  RRP4/YHR069C	RRP42/YDL111C	RRP43/YCR035C	SDC1/YDR469W	SET1/YHR119W
  SGO1/YOR073W	SHG1/YBR258C	SKI6/YGR195W	SPP1/YPL138C	SUR7/YML052W
  SWD1/YAR003W	SWD2/YKL018W	SWD3/YBR175W	SYP1/YCR030C	UPC2/YDR213W
  YFH1/YDL120W

Biochemical Pathways Wall Poster - September 22, 2008

• The Biochemical Pathways poster on display at the 2008 YGMB meeting in Toronto can be downloaded from the Biochemical Pathways page. The poster can be printed for easy viewing as a wall chart. In addition, the Yeast Biochemical Pathways have been upgraded to Pathway Tools version 12.0. The yeastcyc12.0 data files that can be used with version 12.0 and the biochemical_pathways.tab file can be downloaded from SGD's FTP site.

New Summary Paragraphs - September 16, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: AGX1/YFL030W and MDH1/YKL085W .

GO Annotation Information - September 16, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  AAC1/YMR056C	AAC3/YBR085W	ARP7/YPR034W	ARP9/YMR033W	BUD6/YLR319C
  CBK1/YNL161W	CMS1/YLR003C	DOT1/YDR440W	ELM1/YKL048C	EMI5/YOL071W
  GET1/YGL020C	GET2/YER083C	GET3/YDL100C	GIC1/YHR061C	GIC2/YDR309C
  GIN4/YDR507C	HHF1/YBR009C	HHF2/YNL030W	HSL1/YKL101W	HTL1/YCR020W-B
  IPL1/YPL209C	ISU1/YPL135W	LDB7/YBL006C	MDH2/YOL126C	MRD1/YPR112C
  MRP8/YKL142W	NAP1/YKR048C	NFS1/YCL017C	NPL6/YMR091C	PAN1/YIR006C
  PEF1/YGR058W	PET9/YBL030C	PFY1/YOR122C	POP1/YNL221C	POP3/YNL282W
  POP4/YBR257W	POP5/YAL033W	POP6/YGR030C	POP7/YBR167C	POP8/YBL018C
  RAD18/YCR066W	RFA1/YAR007C	RFA2/YNL312W	RFA3/YJL173C	RPP1/YHR062C
  RPR1	RPR2/YIR015W	RSC1/YGR056W	RSC2/YLR357W	RSC3/YDR303C
  RSC30/YHR056C	RSC4/YKR008W	RSC58/YLR033W	RSC6/YCR052W	RSC8/YFR037C
  RSC9/YML127W	RTT10/YPL183C	RTT102/YGR275W	SAS10/YDL153C	SFH1/YLR321C
  SIS1/YNL007C	SLI15/YBR156C	SLY1/YDR189W	SRB2/YHR041C	SRL4/YPL033C
  STH1/YIL126W	UTP21/YLR409C	UTP30/YKR060W	VPS75/YNL246W	YAH1/YPL252C
  YFH1/YDL120W	YPT1/YFL038C	YNL313C	YOR251C

New Summary Paragraphs - September 9, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  SEN15/YMR059W	SEN2/YLR105C	SEN34/YAR008W	SEN54/YPL083C	TRL1/YJL087C

GO Annotation Information - September 9, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  AAT1/YKL106W	ADK1/YDR226W	AIM28/YKR016W	ATP1/YBL099W	ATP14/YLR295C
  ATP15/YPL271W	ATP16/YDL004W	ATP17/YDR377W	ATP2/YJR121W	ATP3/YBR039W
  ATP4/YPL078C	ATP6/Q0085	ATP7/YKL016C	CAT2/YML042W	CPR1/YDR155C
  DAP2/YHR028C	ESP1/YGR098C	EXO70/YJL085W	FMT1/YBL013W	GDH1/YOR375C
  GDH3/YAL062W	GLT1/YDL171C	GUF1/YLR289W	GUT2/YIL155C	HOP1/YIL072W
  HOS2/YGL194C	HOS4/YIL112W	HST1/YOL068C	KSP1/YHR082C	MAG2/YLR427W
  MDH1/YKL085W	MEK1/YOR351C	NOP9/YJL010C	OLI1/Q0130	PLP1/YDR183W
  PLP2/YOR281C	POL2/YNL262W	POL4/YCR014C	PRP40/YKL012W	RMD11/YHL023C
  SEC3/YER008C	SET3/YKR029C	SHR5/YOL110W	SIF2/YBR103W	SKS1/YPL026C
  SNT1/YCR033W	SWT21/YNL187W	TAH18/YPR048W	TRR1/YDR353W	URA6/YKL024C
  YAT1/YAR035W	YAT2/YER024W	YFH1/YDL120W	YKU80/YMR106C	YHL008C
  YPL225W

GO Annotation Information - September 2, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ARE1/YCR048W	ARE2/YNR019W	ASF1/YJL115W	ATG1/YGL180W	ATG10/YLL042C
  ATG11/YPR049C	ATG12/YBR217W	ATG13/YPR185W	ATG14/YBR128C	ATG15/YCR068W
  ATG16/YMR159C	ATG17/YLR423C	ATG18/YFR021W	ATG2/YNL242W	ATG21/YPL100W
  ATG29/YPL166W	ATG3/YNR007C	ATG4/YNL223W	ATG5/YPL149W	ATG7/YHR171W
  ATG8/YBL078C	ATG9/YDL149W	CIS1/YDR022C	CTK1/YKL139W	CTK2/YJL006C
  CTK3/YML112W	DOT1/YDR440W	DUG1/YFR044C	DUG2/YBR281C	DUG3/YNL191W
  ESP1/YGR098C	GCN5/YGR252W	GDH3/YAL062W	GRX6/YDL010W	GRX7/YBR014C
  GSG1/YDR108W	HHF1/YBR009C	HHF2/YNL030W	MTQ2/YDR140W	NAP1/YKR048C
  RAD52/YML032C	RPS2/YGL123W	RTT109/YLL002W	SAS2/YMR127C	SEC17/YBL050W
  SEC18/YBR080C	SEN15/YMR059W	SEN2/YLR105C	SEN34/YAR008W	SEN54/YPL083C
  SIR3/YLR442C	SNX4/YJL036W	SUS1/YBR111W-A	TOP2/YNL088W	TRM112/YNR046W
  VAC8/YEL013W	VAM3/YOR106W	VAM6/YDL077C	VAM7/YGL212W	VPS30/YPL120W
  VPS33/YLR396C	VPS41/YDR080W	VPS75/YNL246W	YPT7/YML001W

New Summary Paragraphs - August 26, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  ADH1/YOL086C	ADH2/YMR303C	ADH3/YMR083W	ADH5/YBR145W	ADH6/YMR318C
  ADH7/YCR105W	AST1/YBL069W	AST2/YER101C	BDH1/YAL060W	BDH2/YAL061W
  ETR1/YBR026C	PEX10/YDR265W	SFA1/YDL168W	SOR1/YJR159W	SOR2/YDL246C
  XYL2/YLR070C	YIM1/YMR152W	ZTA1/YBR046C	YCR102C	YLR460C
  YML131W	YNL134C

GO Annotation Information - August 26, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ACM1/YPL267W	AHP1/YLR109W	ALG12/YNR030W	ALG13/YGL047W	APE2/YKL157W
  ATP1/YBL099W	ATP15/YPL271W	ATP16/YDL004W	ATP2/YJR121W	ATP23/YNR020C
  ATP3/YBR039W	ATP4/YPL078C	ATP5/YDR298C	ATP6/Q0085	ATP7/YKL016C
  ATS1/YAL020C	BRX1/YOL077C	CAB1/YDR531W	CGR1/YGL029W	CHD1/YER164W
  CIA1/YDR267C	CIC1/YHR052W	CPS1/YJL172W	DML1/YMR211W	DOT5/YIL010W
  DUG1/YFR044C	DUG2/YBR281C	DUG3/YNL191W	EBP2/YKL172W	ECO1/YFR027W
  ENP2/YGR145W	ERB1/YMR049C	ERG29/YMR134W	FCF2/YLR051C	GAS1/YMR307W
  GDH1/YOR375C	GPI19/YDR437W	GRX1/YCL035C	GRX2/YDR513W	GWT1/YJL091C
  HAS1/YMR290C	HPR1/YDR138W	ICP55/YER078C	IMP1/YMR150C	IMP2/YMR035W
  INN1/YNL152W	IPI3/YNL182C	JIP5/YPR169W	KEI1/YDR367W	KEX1/YGL203C
  LAP4/YKL103C	LIP1/YMR298W	LOC1/YFR001W	MAP1/YLR244C	MAP2/YBL091C
  MAS1/YLR163C	MAS2/YHR024C	MCA1/YOR197W	MDH1/YKL085W	MKC7/YDR144C
  MMS4/YBR098W	MPP6/YNR024W	MRT4/YKL009W	NAM7/YMR080C	NIP7/YPL211W
  NOG1/YPL093W	NOG2/YNR053C	NOP15/YNL110C	NOP16/YER002W	NOP2/YNL061W
  NSA1/YGL111W	NSA2/YER126C	NSE3/YDR288W	NSE5/YML023C	NUS1/YDL193W
  OAC1/YKL120W	OCT1/YKL134C	PAM18/YLR008C	PAN2/YGL094C	PAN3/YKL025C
  PEP4/YPL154C	PEX10/YDR265W	PGA1/YNL158W	PGA2/YNL149C	PHS1/YJL097W
  PRC1/YMR297W	PRX1/YBL064C	RCE1/YMR274C	RIX1/YHR197W	RLP24/YLR009W
  RLP7/YNL002C	RMP1/YLR145W	RPF1/YHR088W	RPF2/YKR081C	RRP1/YDR087C
  RRS1/YOR294W	RSP5/YER125W	RTT106/YNL206C	SAC3/YDR159W	SEC11/YIR022W
  SEC39/YLR440C	SEN15/YMR059W	SEN2/YLR105C	SEN34/YAR008W	SEN54/YPL083C
  SPC3/YLR066W	SPP382/YLR424W	SUB2/YDL084W	SWC4/YGR002C	THO2/YNL139C
  THP1/YOL072W	TIF6/YPR016C	TRM112/YNR046W	TRR1/YDR353W	TRR2/YHR106W
  TRX1/YLR043C	TRX2/YGR209C	TRZ1/YKR079C	TSA1/YML028W	TSA2/YDR453C
  UBP3/YER151C	UPF3/YGR072W	USV1/YPL230W	UTP11/YKL099C	UTP14/YML093W
  UTP23/YOR004W	UTP5/YDR398W	YPP1/YGR198W	YTM1/YOR272W	YBL028C
  YBR139W	YDR196C	YFR006W	YGR277C	YHR113W
  YHR122W	YIL083C	YJR012C	YJR136C	YJR141W
  YKL088W	YLR132C	YLR243W	YML131W	YNL181W
  YNL260C	YOL057W	YOR060C	YOR251C

GO Annotation Information - August 19, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  CCR4/YAL021C	CDC10/YCR002C	CDC11/YJR076C	CDC12/YHR107C	CDC3/YLR314C
  DDC1/YPL194W	DOM34/YNL001W	DPB11/YJL090C	DST1/YGL043W	DYN2/YDR424C
  FRQ1/YDR373W	FYV10/YIL097W	GAP1/YKR039W	GAR1/YHR089C	GDH1/YOR375C
  GDT1/YBR187W	GID7/YCL039W	GID8/YMR135C	HER1/YOR227W	HER2/YMR293C
  HRD3/YLR207W	IME4/YGL192W	MEC3/YLR288C	NOP1/YDL014W	NOP58/YOR310C
  POP2/YNR052C	PUT4/YOR348C	RAD17/YOR368W	RAD24/YER173W	RDS3/YPR094W
  RFC2/YJR068W	RFC3/YNL290W	RFC4/YOL094C	RFC5/YBR087W	RMD5/YDR255C
  RRP4/YHR069C	RXT3/YDL076C	SDS22/YKL193C	SHS1/YDL225W	SIK1/YLR197W
  SNR128/snR128	SNR13/snR13	SNR17B/snR17b	SNR18/snR18	SNR190/snR190
  SNR24/snR24	SNR4/snR4	VID24/YBR105C	VID28/YIL017C	VID30/YGL227W
  YIL091C

New Summary Paragraphs - August 12, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  MET13/YGL125W	SCR1	SEC65/YML105C	SRP14/YDL092W	SRP21/YKL122C
  SRP54/YPR088C	SRP68/YPL243W	SRP72/YPL210C

GO Annotation Information - August 12, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ACM1/YPL267W	ATG13/YPR185W	ATG23/YLR431C	AUR1/YKL004W	CCR4/YAL021C
  CHK1/YBR274W	CRM1/YGR218W	DOT1/YDR440W	HSP10/YOR020C	HSP60/YLR259C
  JLP1/YLL057C	LSM2/YBL026W	LSM4/YER112W	LSM6/YDR378C	MET12/YPL023C
  MET13/YGL125W	NTE1/YML059C	POP2/YNR052C	PPX1/YHR201C	PRP24/YMR268C
  RET2/YFR051C	SPC72/YAL047C	SSN2/YDR443C	THI4/YGR144W	YPT1/YFL038C
  YPT11/YNL304W

New Summary Paragraphs - August 5, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: ATG8/YBL078C .

GO Annotation Information - August 5, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ARA1/YBR149W	CHS7/YHR142W	CSM4/YPL200W	DNL4/YOR005C	EST2/YLR318W
  GCY1/YOR120W	GRE3/YHR104W	GSF2/YML048W	HOM3/YER052C	IVY1/YDR229W
  KTI11/YBL071W-A	MET12/YPL023C	MET13/YGL125W	MPS3/YJL019W	MRC1/YCL061C
  NAF1/YNL124W	NDJ1/YOL104C	NUS1/YDL193W	PGA2/YNL149C	PHO86/YJL117W
  PHS1/YJL097W	PMR1/YGL167C	RAD61/YDR014W	RNA1/YMR235C	RNR1/YER070W
  RNR2/YJL026W	RNR3/YIL066C	RNR4/YGR180C	RPO41/YFL036W	SHQ1/YIL104C
  SYT1/YPR095C	TAR1/YLR154W-C	TMA29/YMR226C	TOF1/YNL273W	VPS74/YDR372C
  YPR1/YDR368W	YDL124W	YGL039W	YJR096W

SGD Quarterly Newsletter - July 31, 2008

• SGD sends out its quarterly newsletter to colleagues designated as contacts in SGD. An HTML version of the newsletter is available. If you would like to receive this letter in the future please use the Colleague Submission/Update form to let us know.

GO Annotation Information - July 29, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  BLM10/YFL007W	CDC14/YFR028C	DRE2/YKR071C	ERP3/YDL018C	ERP4/YOR016C
  ERP5/YHR110W	ERP6/YGL002W	LOH1/YJL038C	MDE1/YJR024C	NUS1/YDL193W
  PHS1/YJL097W	POL31/YJR006W	POL32/YJR043C	PRE4/YFR050C	RPN2/YIL075C
  SEC39/YLR440C	SEC65/YML105C	SLM1/YIL105C	SLM2/YNL047C	SML1/YML058W
  SOR2/YDL246C	SRP54/YPR088C	TAF1/YGR274C	TAF10/YDR167W	TAF11/YML015C
  TAF12/YDR145W	TAF13/YML098W	TAF4/YMR005W	TAF6/YGL112C	TAF7/YMR227C
  TAF8/YML114C	TAF9/YMR236W	TOF2/YKR010C	TRA1/YHR099W	ULS1/YOR191W
  UTR4/YEL038W	XYL2/YLR070C

MORE Functional Predictions Available as GO Annotations - July 23, 2008

• SGD has incorporated computational GO annotations from a method published in Tian et. al., G enome Biology 2008 that combines guilt-by-profiling and guilt-by-association analysis to infer gene function. These data can be viewed in the computational GO annotation section (for example, see GO annotations for YCR041 W). Links to gene pages at the YeastFunc viewer are available on the GO Annotation details page in the 'Assigned By' column and in the 'Functional Analysis' pull-down on the righthand side of the Locus Summary pages. Thanks to Weidong Tian, John Beaver , and Fritz Roth for working with SGD on incorporating these data and links.

New Summary Paragraphs - July 22, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  BFR2/YDR299W	BMS1/YPL217C	BUD21/YOR078W	DBP8/YHR169W	DIM1/YPL266W
  DIP2/YLR129W	ECM16/YMR128W	EMG1/YLR186W	ENP1/YBR247C	ENP2/YGR145W
  FCF1/YDR339C	HAS1/YMR290C	IMP3/YHR148W	IMP4/YNL075W	KRE33/YNL132W
  KRR1/YCL059C	MPP10/YJR002W	MRD1/YPR112C	NAN1/YPL126W	NOC4/YPR144C
  NOP14/YDL148C	NOP9/YJL010C	PNO1/YOR145C	PWP2/YCR057C	RCL1/YOL010W
  ROK1/YGL171W	RRP12/YPL012W	RRP5/YMR229C	SAS10/YDL153C	SCL1/YGL011C
  SLX9/YGR081C	SNR17A/snR17a	SNR17B/snR17b	SNU13/YEL026W	SOF1/YLL011W
  TSR1/YDL060W	UTP10/YJL109C	UTP11/YKL099C	UTP13/YLR222C	UTP14/YML093W
  UTP15/YMR093W	UTP18/YJL069C	UTP20/YBL004W	UTP21/YLR409C	UTP22/YGR090W
  UTP23/YOR004W	UTP30/YKR060W	UTP4/YDR324C	UTP5/YDR398W	UTP6/YDR449C
  UTP7/YER082C	UTP8/YGR128C	UTP9/YHR196W	YLR003C

GO Annotation Information - July 22, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  AHA1/YDR214W	AHC2/YCR082W	AIP1/YMR092C	ARP7/YPR034W	ARP9/YMR033W
  ARR1/YPR199C	ASE1/YOR058C	ATG15/YCR068W	ATG3/YNR007C	ATG4/YNL223W
  ATG8/YBL078C	BBC1/YJL020C	BSP1/YPR171W	COQ4/YDR204W	CRN1/YLR429W
  DCN1/YLR128W	EAP1/YKL204W	ECO1/YFR027W	ENA1/YDR040C	ERG6/YML008C
  EST3/YIL009C-A	FYV4/YHR059W	GAR1/YHR089C	GCN2/YDR283C	HIT1/YJR055W
  HOC1/YJR075W	HSL7/YBR133C	HSP10/YOR020C	HSP60/YLR259C	LAS17/YOR181W
  LDB19/YOR322C	MAF1/YDR005C	MDM20/YOL076W	MGM1/YOR211C	MKS1/YNL076W
  MKT1/YNL085W	MNN9/YPL050C	MRPL32/YCR003W	MYO3/YKL129C	MYO5/YMR109W
  NHP2/YDL208W	NOB1/YOR056C	NOP10/YHR072W-A	PET191/YJR034W	RLM1/YPL089C
  RRP43/YCR035C	RSC1/YGR056W	RSC2/YLR357W	RSC3/YDR303C	RSC30/YHR056C
  RSC4/YKR008W	RSC6/YCR052W	RSC8/YFR037C	RSC9/YML127W	RTC1/YOL138C
  SFH1/YLR321C	SHE2/YKL130C	SHE3/YBR130C	SMD1/YGR074W	SNF3/YDL194W
  SNT1/YCR033W	SOR1/YJR159W	STH1/YIL126W	UBA1/YKL210W	UFD2/YDL190C
  VAN1/YML115C	VTS1/YOR359W	WHI2/YOR043W	XDJ1/YLR090W	YBR284W
  YDL118W	YDL124W	YDR532C	YEL057C	YGL039W
  YGR042W	YGR160W	YHL012W	YOR008C-A	YPL041C

Expanded Phenotype Data and New Curation System - July 17, 2008

• SGD is now releasing our improved and expanded mutant phenotype pages. Over the past year, we re-curated existing mutant phenotypes and added more phenotype data, both using a new controlled-vocabulary system. The implementation of this system greatly increases the amount of detailed information that can be captured for each phenotype, and facilitates searching and comparison of mutant phenotypes.

  Each phenotype annotation contains a term representing the entity or process that is observed (e.g., sporulation efficiency, carbon source utilization, cell size) and a qualifier that describes the effect on that entity or process in the mutant (e.g., decreased, increased, abnormal). Additional fields display information such as strain background, allele name, conditions under which the phenotype is observed, or the identity of relevant chemicals. A brief version of the phenotype is displayed on the Locus Summary page for each gene, and the complete information is accessible via the 'Phenotype' tab at the top of the page (for example, see WHI3). SGD now contains more than 25,000 phenotype annotations, nearly double the previous number, and we will continue to build upon this annotation with the aim of providing comprehensive phenotype information. All of the information is searchable and may also be downloaded in bulk using SGD's Batch Download tool or FTP site.

Functional Predictions Available as GO Annotations - July 17, 2008

• SGD has incorporated computational GO annotations from the functional predictions based on the analysis of multiple high-throughput datasets published in Huttenhower and Troyanskaya, 2008. This method is described further in Myers et al., 2005, Myers et al., 2007, and Huttenhower et al., 2006. These data can be viewed in the computational GO annotation section (for example, see GO annotations for YDL156W). Thanks to Curtis Huttenhower and Olga Troyanskaya for working with SGD on incorporating these data.

Improvements to the SGD Search - July 17, 2008

• The SGD Quick Search has been expanded to retrieve information from 14 major categories including: names, descriptions, functional information, phenotype data, colleagues, authors, and external IDs. Results are now organized under topic headings that group similar types of information. This basic search is accessible from the top of most SGD pages, as well as from the Search Options page.

Improved Display, Sorting and Filtering of Interaction Data - July 17, 2008

• The Interactions page has been updated to allow physical and genetic interactions to be sorted and filtered based on an experimental method, reference, or phenotype. This table also includes notes about the interaction as well as the annotation type to facilitate the identification of high-throughput datasets. SGD now includes 121,580 curated physical and genetic interactions from the BioGRID version 2.0.42 release. New interactions are added on a monthly basis. These data are available over the web and via bulk download through both BioGRID and a new FTP file at SGD.

New Summary Paragraphs - July 15, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  AIM10/YER087W	ALA1/YOR335C	CDC60/YPL160W	DED81/YHR019C	DIA4/YHR011W
  DPS1/YLL018C	FRS1/YLR060W	FRS2/YFL022C	GLN4/YOR168W	GRS1/YBR121C
  GRS2/YPR081C	GUS1/YGL245W	HTS1/YPR033C	ILS1/YBL076C	ISM1/YPL040C
  KRS1/YDR037W	MES1/YGR264C	MSD1/YPL104W	MSE1/YOL033W	MSF1/YPR047W
  MSK1/YNL073W	MSM1/YGR171C	MSR1/YHR091C	MST1/YKL194C	MSW1/YDR268W
  MSY1/YPL097W	NAM2/YLR382C	SES1/YDR023W	SLM5/YCR024C	THS1/YIL078W
  TYS1/YGR185C	VAS1/YGR094W	WRS1/YOL097C	YDR341C	YHR020W
  YNL247W

GO Annotation Information - July 15, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  CDC55/YGL190C	FOL2/YGR267C	MPS1/YDL028C	MPS2/YGL075C	NOP1/YDL014W
  NOP58/YOR310C	POL3/YDL102W	RRP9/YPR137W	SAL1/YNL083W	SDA1/YGR245C
  SIK1/YLR197W	SNR17A/snR17a	SNU13/YEL026W	SWE1/YJL187C	THS1/YIL078W
  VPS74/YDR372C

New Summary Paragraphs - July 8, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: CTA1/YDR256C .

GO Annotation Information - July 8, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  CBP3/YPL215W	CBP4/YGR174C	CDC1/YDR182W	DEG1/YFL001W	ESF2/YNR054C
  INP51/YIL002C	INP52/YNL106C	INP53/YOR109W	INP54/YOL065C	MDM30/YLR368W
  NOP1/YDL014W	PRE1/YER012W	PRE2/YPR103W	PUF4/YGL014W	PUS1/YPL212C
  PUS2/YGL063W	PUS4/YNL292W	PUS9/YDL036C	QCR7/YDR529C	RIB2/YOL066C
  ROT1/YMR200W	RPL30/YGL030W	RPT6/YGL048C	RRP9/YPR137W	SAC3/YDR159W
  SNR45/snR45	SNR63/snR63	SNU13/YEL026W	SRP54/YPR088C	STM1/YLR150W
  TCM62/YBR044C	UTP21/YLR409C	UTP4/YDR324C	UTP8/YGR128C	UTP9/YHR196W
  VPS74/YDR372C

New Summary Paragraphs - July 1, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  FIG4/YNL325C	GCV3/YAL044C	MSS4/YDR208W	SAC1/YKL212W	SOD2/YHR008C
  YMR1/YJR110W

GO Annotation Information - July 1, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ATG14/YBR128C	BRE5/YNR051C	CMC1/YKL137W	COA1/YIL157C	COX12/YLR038C
  COX17/YLL009C	COX19/YLL018C-A	COX20/YDR231C	KRE33/YNL132W	KRR1/YCL059C
  KRS1/YDR037W	MUB1/YMR100W	PAP2/YOL115W	PEP1/YBL017C	PET100/YDR079W
  PET117/YER058W	PET191/YJR034W	PET309/YLR067C	POL30/YBR088C	PRE10/YOR362C
  PRE3/YJL001W	PRE4/YFR050C	PRE5/YMR314W	PRE6/YOL038W	PRE8/YML092C
  PRE9/YGR135W	PUP1/YOR157C	PUP2/YGR253C	RPN1/YHR027C	RPN11/YFR004W
  RPN12/YFR052W	RPN13/YLR421C	RPN2/YIL075C	RPN5/YDL147W	RPN6/YDL097C
  RPN8/YOR261C	RPN9/YDR427W	RPP0/YLR340W	RPS0A/YGR214W	RPS11A/YDR025W
  RPS11B/YBR048W	RPS13/YDR064W	RPS14A/YCR031C	RPS16A/YMR143W	RPS1A/YLR441C
  RPS1B/YML063W	RPS3/YNL178W	RPS4A/YJR145C	RPS4B/YHR203C	RPS5/YJR123W
  RPS6A/YPL090C	RPS7A/YOR096W	RPS8A/YBL072C	RPS8B/YER102W	RPS9A/YPL081W
  RPS9B/YBR189W	RPT6/YGL048C	RTT109/YLL002W	SCL1/YGL011C	SEM1/YDR363W-A
  SHY1/YGR112W	SNR128/snR128	SNR17A/snR17a	SNR17B/snR17b	SOD2/YHR008C
  SSE1/YPL106C	UBP3/YER151C	UBR2/YLR024C	VPS30/YPL120W	VPS38/YLR360W
  VPS75/YNL246W	VTS1/YOR359W	YOL057W

New Summary Paragraphs - June 24, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: MDJ1/YFL016C and VPS34/YLR240W .

GO Annotation Information - June 24, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  COA2/YPL189C-A	EFG1/YGR271C-A	FAB1/YFR019W	FCF1/YDR339C	FCF2/YLR051C
  FLO8/YER109C	FOX2/YKR009C	FUS2/YMR232W	INN1/YNL152W	KAE1/YKR038C
  KEG1/YFR042W	KRS1/YDR037W	LSB6/YJL100W	MMS1/YPR164W	MMS22/YLR320W
  PXR1/YGR280C	SMT3/YDR510W	SNR10/snR10	SWC4/YGR002C	TPI1/YDR050C
  TRS23/YDR246W	UTP23/YOR004W	VAC7/YNL054W	VPS4/YPR173C	YGR251W
  YHR020W

GO Annotation Information - June 17, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  BFR2/YDR299W	CTA1/YDR256C	PUS7/YOR243C	REX2/YLR059C	REX3/YLR107W
  REX4/YOL080C	RFM1/YOR279C	RMD5/YDR255C	RNH70/YGR276C	RRP6/YOR001W
  SNR43/snR43	SNU13/YEL026W	SUM1/YDR310C	TRZ1/YKR079C

New Summary Paragraphs - June 10, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  INP51/YIL002C	INP52/YNL106C	INP53/YOR109W	INP54/YOL065C	LSB6/YJL100W
  NFU1/YKL040C	PIK1/YNL267W	STT4/YLR305C

GO Annotation Information - June 10, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ACM1/YPL267W	AIM1/YAL046C	AIM33/YML087C	ATG11/YPR049C	ATG15/YCR068W
  ATG20/YDL113C	ATG21/YPL100W	ATG23/YLR431C	ATG27/YJL178C	CAF20/YOR276W
  CKA1/YIL035C	CKA2/YOR061W	CKB1/YGL019W	CKB2/YOR039W	DCD1/YHR144C
  DEM1/YBR163W	DGK1/YOR311C	DIP2/YLR129W	DRE2/YKR071C	EAR1/YMR171C
  ESF2/YNR054C	FAB1/YFR019W	FIG4/YNL325C	FMP37/YGL080W	FYV10/YIL097W
  GCV3/YAL044C	GEM1/YAL048C	GID7/YCL039W	GID8/YMR135C	GTR1/YML121W
  GTR2/YGR163W	HGH1/YGR187C	HSF1/YGL073W	HUL5/YGL141W	IMP3/YHR148W
  IMP4/YNL075W	INH1/YDL181W	INP51/YIL002C	INP52/YNL106C	INP53/YOR109W
  INP54/YOL065C	IRC21/YMR073C	LRC3/YKL207W	LSB6/YJL100W	LTV1/YKL143W
  MAL22	MAL42	MDJ1/YFL016C	MEH1/YKR007W	MGE1/YOR232W
  MMR1/YLR190W	MPP10/YJR002W	MSS4/YDR208W	NAN1/YPL126W	PGA3/YML125C
  PGC1/YPL206C	PIK1/YNL267W	PUF3/YLL013C	PWP2/YCR057C	REX2/YLR059C
  REX3/YLR107W	RMD5/YDR255C	RNH70/YGR276C	RRP7/YCL031C	SAC1/YKL212W
  SEC3/YER008C	SIR3/YLR442C	SLM4/YBR077C	SNO1/YMR095C	SNX3/YOR357C
  SNX4/YJL036W	SPO14/YKR031C	SSC1/YJR045C	SSH4/YKL124W	STF1/YDL130W-A
  STF2/YGR008C	STT4/YLR305C	SWC4/YGR002C	UBC8/YEL012W	UBP14/YBR058C
  UFD2/YDL190C	UTP10/YJL109C	UTP13/YLR222C	UTP15/YMR093W	UTP18/YJL069C
  UTP21/YLR409C	UTP22/YGR090W	UTP4/YDR324C	UTP5/YDR398W	UTP6/YDR449C
  UTP8/YGR128C	UTP9/YHR196W	VPS34/YLR240W	YMR1/YJR110W	YPT11/YNL304W
  YHR122W	YLL023C	YLR064W	YOR164C	YOR262W

Sequence and Annotation Updates - June 6, 2008

• SGD curators periodically update the systematic sequence and its annotation. Information regarding changes can be found via the Summary of Chromosome Sequence and Annotation Updates and in the "Locus History" pages of affected features. Files on the SGD FTP site are updated weekly.

  Between 2008-06-02 and 2008-06-06, the sequences of Chromosomes IV, X, and XI were updated, affecting ORFs YDL038C, PRM7/YDL039C, BUD4/YJR092W, and ASK1/YKL052C; the annotation of ORFs LSB3/YFR024C-A, and ADH4/YGL256W on Chromosomes VI and VII were udpated; and a new LTR YCLWdelta15 was annotated on Chromosome III.

GO Annotation Information - June 3, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ATG16/YMR159C	ATG17/YLR423C	ATG18/YFR021W	ATG19/YOL082W	ATG20/YDL113C
  ATG21/YPL100W	ATG22/YCL038C	ATG23/YLR431C	ATG27/YJL178C	ATG29/YPL166W
  CIS1/YDR022C	GRX1/YCL035C	GRX2/YDR513W	GRX3/YDR098C	GRX4/YER174C
  GRX5/YPL059W	GVP36/YIL041W	PRP8/YHR165C	RNH1/YMR234W	RNH201/YNL072W
  SMY2/YBR172C	SNU114/YKL173W	SNX4/YJL036W	SPT20/YOL148C	TRX1/YLR043C
  TRX2/YGR209C	TRX3/YCR083W	VPS15/YBR097W	VPS30/YPL120W	VPS34/YLR240W
  YBP2/YGL060W

GO Annotation Information - May 27, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ATG13/YPR185W	ATG14/YBR128C	CDC5/YMR001C	MATALPHA2/YCR039C	MBP1/YDL056W
  MPP10/YJR002W	MRD1/YPR112C	NFU1/YKL040C	PGC1/YPL206C	RCL1/YOL010W
  REX2/YLR059C	REX3/YLR107W	REX4/YOL080C	RNH70/YGR276C	RPN13/YLR421C
  RRP5/YMR229C	RTR1/YER139C	SSQ1/YLR369W	SWI4/YER111C	SWI6/YLR182W
  VPS15/YBR097W	VPS30/YPL120W	VPS34/YLR240W	VPS38/YLR360W

GO Annotation Information - May 20, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ARP7/YPR034W	ARP9/YMR033W	ATG1/YGL180W	ATG10/YLL042C	ATG11/YPR049C
  ATG12/YBR217W	ATG13/YPR185W	ATG16/YMR159C	ATG17/YLR423C	ATG2/YNL242W
  ATG3/YNR007C	ATG4/YNL223W	ATG5/YPL149W	ATG7/YHR171W	ATG8/YBL078C
  ATG9/YDL149W	DBP8/YHR169W	ERG2/YMR202W	ESF2/YNR054C	PNO1/YOR145C
  RNR1/YER070W	RRD1/YIL153W	SLX9/YGR081C	SNF12/YNR023W	SNF2/YOR290C
  SNF5/YBR289W	SNF6/YHL025W	SWI1/YPL016W	SWI3/YJL176C	SWP82/YFL049W
  URA10/YMR271C	URA3/YEL021W	URA5/YML106W	URC2/YDR520C	VMA22/YHR060W

New Summary Paragraphs - May 13, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  FAB1/YFR019W	FIG4/YNL325C	INP51/YIL002C	INP52/YNL106C	INP53/YOR109W
  INP54/YOL065C	LSB6/YJL100W	MSS4/YDR208W	PIK1/YNL267W	SAC1/YKL212W
  SOD1/YJR104C	STT4/YLR305C	VPS34/YLR240W	YMR1/YJR110W

GO Annotation Information - May 13, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ATP1/YBL099W	ATP15/YPL271W	ATP16/YDL004W	ATP2/YJR121W	ATP3/YBR039W
  BRR2/YER172C	CAF20/YOR276W	CTF18/YMR078C	CTF4/YPR135W	DDP1/YOR163W
  DHH1/YDL160C	ECO1/YFR027W	EMP70/YLR083C	HSD1/YOR311C	HUL5/YGL141W
  LSR1	MCD1/YDL003W	MER1/YNL210W	MUD2/YKL074C	NAG1/YGR031C-A
  NAM8/YHR086W	NTR2/YKR022C	PHS1/YJL097W	PLC1/YPL268W	PPM2/YOL141W
  PRP16/YKR086W	PRP2/YNR011C	PRP22/YER013W	PRP28/YDR243C	PRP38/YGR075C
  PRP43/YGL120C	PRP5/YBR237W	PUG1/YER185W	SFA1/YDL168W	SNF2/YOR290C
  SNF5/YBR289W	SNF6/YHL025W	SNR19/snR19	SNR7-L/snR7-L	SNR7-S/snR7-S
  SPP382/YLR424W	SQS1/YNL224C	SUB2/YDL084W	SWI1/YPL016W	SWI3/YJL176C
  THS1/YIL078W	TMN2/YDR107C	TMN3/YER113C	TPI1/YDR050C	TRM12/YML005W
  TYW3/YGL050W	UBP6/YFR010W

New Summary Paragraphs - May 6, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: DDP1/YOR163W and PLC1/YPL268W .

GO Annotation Information - May 6, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  BTT1/YDR252W	CMC1/YKL137W	GAL1/YBR020W	GAL10/YBR019C	GAL7/YBR018C
  GCY1/YOR120W	GET3/YDL100C	GRE3/YHR104W	PAU5/YFL020C	PET127/YOR017W
  PRS1/YKL181W	PRS2/YER099C	PRS3/YHL011C	PRS4/YBL068W	PRS5/YOL061W
  RRP15/YPR143W	SAE2/YGL175C	SNR7-L/snR7-L	SNR7-S/snR7-S	SPT6/YGR116W
  VPS55/YJR044C	VPS68/YOL129W	YPR1/YDR368W	YDL124W	YJR096W

SGD Quarterly Newsletter - April 30, 2008

• SGD sends out its quarterly newsletter to colleagues designated as contacts in SGD. An HTML version of the newsletter is available. If you would like to receive this letter in the future please use the Colleague Submission/Update form to let us know.

New Gene Ontology (GO) Evidence Codes - April 29, 2008

• The Gene Ontology Consortium (GOC) has added three new subcodes for the ISS (Inferred from Sequence or Structural Similarity) evidence code in order to distinguish the types of sequence-based methods used as evidence in making annotations: Inferred from Sequence Alignment (ISA), Inferred from Sequence Orthology (ISO), and Inferred from Sequence Model (ISM). Full documentation on these evidence codes is available at the GOC website. SGD has started using these new subcodes to annotate S. cerevisiae gene products as of April 16th, and these evidence codes are included on the Locus Summary pages, the GO Annotation details and references pages, the downloadable gene_association.sgd file and the GO Term Finder tool.

New Summary Paragraphs - April 29, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  ATG1/YGL180W	ATG10/YLL042C	ATG11/YPR049C	ATG12/YBR217W	ATG13/YPR185W
  ATG14/YBR128C	ATG15/YCR068W	ATG16/YMR159C	ATG17/YLR423C	ATG18/YFR021W
  ATG19/YOL082W	ATG2/YNL242W	ATG20/YDL113C	ATG21/YPL100W	ATG22/YCL038C
  ATG23/YLR431C	ATG26/YLR189C	ATG27/YJL178C	ATG29/YPL166W	ATG3/YNR007C
  ATG4/YNL223W	ATG5/YPL149W	ATG7/YHR171W	ATG8/YBL078C	ATG9/YDL149W
  CIS1/YDR022C	SNX4/YJL036W	VPS30/YPL120W

GO Annotation Information - April 29, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  CWH43/YCR017C	IST1/YNL265C	MBA1/YBR185C	MRS6/YOR370C	NTH2/YBR001C
  OXA1/YER154W	ROM1/YGR070W	ROM2/YLR371W	SLC1/YDL052C	TRM3/YDL112W
  TRM44/YPL030W	TRM9/YML014W

GO Annotation Information - April 22, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  AAC3/YBR085W	AAH1/YNL141W	AFI1/YOR129C	ARF3/YOR094W	BIO7/YHR214W-G
  BIO8/YHR214W-F	CDC28/YBR160W	DHH1/YDL160C	ERP3/YDL018C	ERP4/YOR016C
  ERP5/YHR110W	ERP6/YGL002W	GSF2/YML048W	GTR1/YML121W	GTR2/YGR163W
  HUB1/YNR032C-A	INO80/YGL150C	IRS4/YKR019C	IVY1/YDR229W	KHS1
  MAL62	NAT5/YOR253W	NUS1/YDL193W	PGA1/YNL158W	PGA2/YNL149C
  PGA3/YML125C	PHO86/YJL117W	PHS1/YJL097W	PMR1/YGL167C	SEC39/YLR440C
  SNR13/snR13	SNR35/snR35	SNR39B/snR39B	SNR40/snR40	SNR41/snR41
  SNR47/snR47	SNR48/snR48	SNR50/snR50	SNR51/snR51	SNR52/snR52
  SNR53/snR53	SNR54/snR54	SNR55/snR55	SNR56/snR56	SNR57/snR57
  SNR58/snR58	SNR59/snR59	SNR6/snR6	SNR60/snR60	SNR61/snR61
  SNR62/snR62	SNR63/snR63	SNR64/snR64	SNR65/snR65	SNR66/snR66
  SNR67/snR67	SNR68/snR68	SNR69/snR69	SNR70/snR70	SNR71/snR71
  SNR72/snR72	SNR73/snR73	SNR74/snR74	SNR75/snR75	SNR76/snR76
  SNR77/snR77	SNR78/snR78	SNR79/snR79	SNR80/snR80	SNR81/snR81
  SNR82/snR82	SNR83/snR83	SNR84/snR84	SNR85/snR85	SYT1/YPR095C
  TAH1/YCR060W	TAX4/YJL083W	TRM44/YPL030W	XDJ1/YLR090W	YEL1/YBL060W

New Wiki Tab - April 18, 2008

• In order to increase accessibility to SGD's Community Wiki, a new Wiki tab has been added to the set of navigation tabs found at the top of the following pages: Locus Summary, Locus History, Literature Guide, Gene Ontology evidence and references, Phenotype details and references, Interaction details and references, Expression Summary, and Protein Info. These Wiki tabs point to the locus-specific pages in the SGD Wiki. We invite researchers to edit the wiki pages for their favorite gene(s).

GO Annotation Information - April 15, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ARC15/YIL062C	ARP2/YDL029W	CDC31/YOR257W	CSR1/YLR380W	DIP2/YLR129W
  EDC3/YEL015W	EMG1/YLR186W	FAS1/YKL182W	FLD1/YLR404W	FRA1/YLL029W
  FRA2/YGL220W	GRX6/YDL010W	GRX7/YBR014C	GTR1/YML121W	GTS1/YGL181W
  HCS1/YKL017C	LSM4/YER112W	MPS3/YJL019W	PET54/YGR222W	PKP1/YIL042C
  PKP2/YGL059W	PRP18/YGR006W	PRP8/YHR165C	PWP2/YCR057C	RPB4/YJL140W
  RTM1	SNR7-L/snR7-L	SNR7-S/snR7-S	UTP13/YLR222C	UTP18/YJL069C
  UTP21/YLR409C	UTP6/YDR449C	VPS4/YPR173C

New Summary Paragraphs - April 8, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: LPD1/YFL018C .

GO Annotation Information - April 8, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ATP25/YMR098C	BFR2/YDR299W	BMS1/YPL217C	BUD21/YOR078W	CBF5/YLR175W
  CIN2/YPL241C	DBP8/YHR169W	DIM1/YPL266W	DIP2/YLR129W	ECM16/YMR128W
  EMG1/YLR186W	ENP1/YBR247C	ENP2/YGR145W	ENS2	FRA1/YLL029W
  FRA2/YGL220W	GIC2/YDR309C	GRX3/YDR098C	HAS1/YMR290C	IMP3/YHR148W
  IMP4/YNL075W	KRE33/YNL132W	KRR1/YCL059C	LSR1	MAL11/YGR289C
  MAL41	MAL61	MPP10/YJR002W	MPR1	MRD1/YPR112C
  NAN1/YPL126W	NHP6A/YPR052C	NHP6B/YBR089C-A	NOC4/YPR144C	NOP1/YDL014W
  NOP14/YDL148C	NOP58/YOR310C	NRK1/YNL129W	PNO1/YOR145C	PNP1/YLR209C
  POB3/YML069W	PRP43/YGL120C	PRS1/YKL181W	RCL1/YOL010W	RDN37-1
  RDN37-2	RNR1/YER070W	RNR2/YJL026W	RNR3/YIL066C	RNR4/YGR180C
  ROK1/YGL171W	RRP12/YPL012W	RRP5/YMR229C	RRP9/YPR137W	SCL1/YGL011C
  SIK1/YLR197W	SMI1/YGR229C	SNR19/snR19	SNR7-L/snR7-L	SNR7-S/snR7-S
  SOF1/YLL011W	SPP382/YLR424W	SPT16/YGL207W	SSC1/YJR045C	TFB5/YDR079C-A
  TSA1/YML028W	TSA2/YDR453C	TSR1/YDL060W	UBP8/YMR223W	UTP10/YJL109C
  UTP13/YLR222C	UTP15/YMR093W	UTP18/YJL069C	UTP20/YBL004W	UTP21/YLR409C
  UTP22/YGR090W	UTP30/YKR060W	UTP4/YDR324C	UTP6/YDR449C	UTP7/YER082C
  UTP8/YGR128C	UTP9/YHR196W	YLR003C

Post job opportunities through SGD - April 2, 2008

• Periodically SGD is asked to advertise job opportunities. In response, we have created a page in the Community Wiki to allow researchers to post positions available in their labs. This page is linked from the Career Resources page listed in the navigation menu. These pages can be edited by clicking the "edit" tab at the top of the page.

GO Annotation Information - April 1, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ARO10/YDR380W	BNA1/YJR025C	BNA2/YJR078W	BNA4/YBL098W	BNA5/YLR231C
  BNA6/YFR047C	BNI1/YNL271C	BSC2/YDR275W	DDI2/YFL061W	FLD1/YLR404W
  FMP48/YGR052W	FMP52/YER004W	HSP31/YDR533C	LPD1/YFL018C	LRC4/YMR098C
  MYO4/YAL029C	NAT2/YGR147C	NRK1/YNL129W	PDH1/YPR002W	PHM8/YER037W
  PHO12/YHR215W	RNR4/YGR180C	ROG3/YFR022W	RPB7/YDR404C	SHE2/YKL130C
  SHE3/YBR130C	SHE4/YOR035C	SIT4/YDL047W	STP4/YDL048C	TMN3/YER113C
  UBC12/YLR306W	UBC9/YDL064W	VPS4/YPR173C	YRO2/YBR054W	YBL112C
  YCL049C	YDR222W	YEL075C	YER130C	YER158C
  YFL065C	YFL066C	YFL067W	YFL068W	YFR026C
  YGL242C	YGR146C	YHL044W	YJL016W	YKR075C
  YLR297W	YML002W	YML119W	YMR144W	YNR068C
  YPR157W

New Summary Paragraphs - March 25, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: CYC1/YJR048W and CYC7/YEL039C .

GO Annotation Information - March 25, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ATG22/YCL038C	BUD23/YCR047C	CBR1/YIL043C	CCR4/YAL021C	CRN1/YLR429W
  CYB2/YML054C	CYC1/YJR048W	CYC7/YEL039C	DID2/YKR035W-A	DUN1/YDL101C
  EEB1/YPL095C	EHT1/YBR177C	FBP1/YLR377C	INN1/YNL152W	KRR1/YCL059C
  LPD1/YFL018C	MOT3/YMR070W	NAT2/YGR147C	PKP1/YIL042C	PKP2/YGL059W
  PTC5/YOR090C	PTC6/YCR079W	PTC7/YHR076W	RAD54/YGL163C	RDH54/YBR073W
  RFX1/YLR176C	ROX1/YPR065W	RPS14A/YCR031C	RPS14B/YJL191W	RPS2/YGL123W
  RPS6A/YPL090C	RPS6B/YBR181C	RPS7A/YOR096W	RPS7B/YNL096C	RPS9A/YPL081W
  RPS9B/YBR189W	SNR35/snR35	UTP21/YLR409C	UTP22/YGR090W	VPS4/YPR173C
  WTM1/YOR230W	WTM2/YOR229W	YMR210W

New Summary Paragraphs - March 18, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  ADH1/YOL086C	ADH2/YMR303C	ADH3/YMR083W	ADH4/YGL256W	ADH5/YBR145W
  ALG7/YBR243C	SFA1/YDL168W

GO Annotation Information - March 18, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ADH1/YOL086C	ADH2/YMR303C	ADH3/YMR083W	ADH4/YGL256W	ADH5/YBR145W
  ARO10/YDR380W	BNA1/YJR025C	BNA2/YJR078W	BNA6/YFR047C	EAF3/YPR023C
  IRC11/YOR013W	IRC14/YOR135C	IRC15/YPL017C	IRC16/YPR038W	IRC19/YLL033W
  IRC4/YDR540C	IRC5/YFR038W	IRC7/YFR055W	IRC8/YJL051W	IRC9/YJL142C
  PDC1/YLR044C	PDC5/YLR134W	PDC6/YGR087C	RAD54/YGL163C	RDH54/YBR073W
  RNR4/YGR180C	SFA1/YDL168W	SKY1/YMR216C	SPT6/YGR116W	THI3/YDL080C
  TPO1/YLL028W	TRS120/YDR407C	TRS130/YMR218C

New Summary Paragraphs - March 11, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  BNA1/YJR025C	BNA2/YJR078W	BNA4/YBL098W	BNA5/YLR231C	BNA6/YFR047C
  BNA7/YDR428C	CRN1/YLR429W	NMA1/YLR328W	NMA2/YGR010W	NPT1/YOR209C
  NRK1/YNL129W	PNC1/YGL037C	PNP1/YLR209C	QNS1/YHR074W	SIR2/YDL042C
  URH1/YDR400W

GO Annotation Information - March 11, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ADH1/YOL086C	BNA3/YJL060W	DMA1/YHR115C	DMA2/YNL116W	DPB2/YPR175W
  DPB3/YBR278W	DPB4/YDR121W	GRE2/YOL151W	IRC25/YLR021W	IST2/YBR086C
  LPD1/YFL018C	MIP1/YOR330C	MST27/YGL051W	MST28/YAR033W	NAR1/YNL240C
  NRK1/YNL129W	POC4/YPL144W	POL1/YNL102W	POL12/YBL035C	POL2/YNL262W
  POL3/YDL102W	POL31/YJR006W	POL32/YJR043C	POL4/YCR014C	PRM8/YGL053W
  PRM9/YAR031W	RAD28/YDR030C	RAD30/YDR419W	REV3/YPL167C	REV7/YIL139C
  RPB7/YDR404C	SLK19/YOR195W	SLX5/YDL013W	SOD1/YJR104C	SOD2/YHR008C
  TPO1/YLL028W	ULS1/YOR191W	YAR029W	YGR031W	YHL044W
  YMR210W

GO annotations with IEAs now in SGD's gene_association file - March 10, 2008

• SGD has changed the contents of our file that contains GO annotations. This is a major change as it now includes annotations that are associated with computationally predicted methods. These annotations include computationally predicted annotations to the Gene Ontology created by the Gene Ontology Annotation (GOA) project at EBI, Hinxton UK. The file available from the GO Consortium is called gene_association.sgd

Sequence and Annotation Updates - March 7, 2008

• SGD curators periodically update the systematic sequence and its annotation. Information regarding changes can be found via the Summary of Chromosome Sequence and Annotation Updates and in the "Locus History" pages of affected features. Files on the SGD FTP site are updated weekly.

  Between 2008-3-3 and 2008-3-7, the sequence of Chromosome I was updated, affecting GCV3/YAL044C; and the annotation of the LTR YCRCtau1 on Chromosome III was updated.

New Summary Paragraphs - March 4, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features: HNM1/YGL077C , PHO85/YPL031C , PMR1/YGL167C , and STE14/YDR410C .

GO Annotation Information - March 4, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ADH1/YOL086C	CRN1/YLR429W	DLD3/YEL071W	GRE2/YOL151W	GUP1/YGL084C
  IRC15/YPL017C	LAS17/YOR181W	LGE1/YPL055C	LIA1/YJR070C	MMS22/YLR320W
  MYO3/YKL129C	MYO5/YMR109W	NBA1/YOL070C	PAN1/YIR006C	PCL1/YNL289W
  PCL10/YGL134W	PCL2/YDL127W	PCL5/YHR071W	PCL7/YIL050W	PCL8/YPL219W
  PCL9/YDL179W	PHO80/YOL001W	PHO85/YPL031C	RMD11/YHL023C	RMR1/YGL250W
  RPC25/YKL144C	SEC27/YGL137W	SEC28/YIL076W	SOH1/YGL127C	STE14/YDR410C

Potential downtime at SGD - February 28, 2008

• SGD may be temporarily unavailable without notice due to an air conditioning problem in our machine room. We will try to keep SGD online. However, it is likely that some SGD pages may be unavailable until this is repaired. You can also view basic yeast data at the SGD Lite database. We apologize in advance for any inconvenience this may cause.

GO Annotation Information - February 26, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ACF2/YLR144C	ADH4/YGL256W	ECM7/YLR443W	ENT3/YJR125C	ENT5/YDR153C
  HNM1/YGL077C	ICP55/YER078C	KEG1/YFR042W	KRE6/YPR159W	MPT5/YGL178W
  NUD1/YOR373W	OLA1/YBR025C	RAD54/YGL163C	RDH54/YBR073W	SCS2/YER120W
  SIM1/YIL123W	STE14/YDR410C	TPO1/YLL028W	TPO2/YGR138C	TPO3/YPR156C
  TPO4/YOR273C	YCR023C	YGR031W

New Summary Paragraphs - February 19, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  SOL1/YNR034W	SOL2/YCR073W-A	SOL3/YHR163W	SOL4/YGR248W	UGA4/YDL210W

GO Annotation Information - February 19, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  ATE1/YGL017W	BNA3/YJL060W	BNA6/YFR047C	DBP1/YPL119C	GCV2/YMR189W
  HIR1/YBL008W	HIR2/YOR038C	HIR3/YJR140C	HPC2/YBR215W	HXK1/YFR053C
  ICT1/YLR099C	MTD1/YKR080W	MTF1/YMR228W	NAM7/YMR080C	NFS1/YCL017C
  NIF3/YGL221C	NRT1/YOR071C	PDS1/YDR113C	RAD3/YER171W	RAD54/YGL163C
  RDH54/YBR073W	RFX1/YLR176C	RPO41/YFL036W	SIM1/YIL123W	SLY1/YDR189W
  SSL2/YIL143C	THI7/YLR237W	THI72/YOR192C	UGA4/YDL210W

Coming Soon: GO annotations with IEAs to be added to SGD's gene_association file on March 8th - February 14, 2008

• On March 8, 2008, SGD will change the contents of our files that contains GO annotations. This is a major change as we will add annotations that are associated with computationally predicted methods. The SGD file currently does not include annotations that are made using the IEA evidence code. These annotations include computationally predicted annotations to the Gene Ontology created by the Gene Ontology Annotation (GOA) project at EBI, Hinxton UK. The file available from the GO Consortium is called gene_association.sgd.

New Summary Paragraphs - February 12, 2008

• Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

  List of Summary Paragraphs Added During the Past Week
  AQR1/YNL065W	ATG1/YGL180W	ATG12/YBR217W	ATG18/YFR021W	ATG21/YPL100W
  ATG3/YNR007C	ATG5/YPL149W	ATG7/YHR171W	ATG8/YBL078C	DTR1/YBR180W
  FLR1/YBR008C	HOL1/YNR055C	HRD1/YOL013C	QDR1/YIL120W	QDR2/YIL121W
  QDR3/YBR043C	SSM4/YIL030C	TPO1/YLL028W	TPO2/YGR138C	TPO3/YPR156C
  TPO4/YOR273C	VPS30/YPL120W	YHK8/YHR048W

GO Annotation Information - February 12, 2008

• During the past week, the GO annotations have been updated for the following features:

  List of Features with GO Annotations Updated During the Past Week
  AGP3/YFL055W	ALR2/YFL050C	ARG82/YDR173C	ASC1/YMR116C	ASF1/YJL115W
  ASN1/YPR145W	ASN2/YGR124W	BEM4/YPL161C	BNA3/YJL060W	BNA7/YDR428C
  BRE1/YDL074C	BUD27/YFL023W	CDC48/YDL126C	CDC73/YLR418C	CKB2/YOR039W
  CLN2/YPL256C	CSE2/YNR010W	CUE1/YMR264W	CWC24/YLR323C	DER1/YBR201W
  EAF3/YPR023C	ELF1/YKL160W	ELG1/YOR144C	HHT1/YBR010W	HNM1/YGL077C
  HRD1/YOL013C	HRD3/YLR207W	IPK1/YDR315C	KAR2/YJL034W	KCS1/YDR017C
  LEO1/YOR123C	MMS1/YPR164W	MMS22/YLR320W	NPL4/YBR170C	PAF1/YBR279W
  PBS2/YJL128C	RPD3/YNL330C	RTF1/YGL244W	RTT10/YPL183C	RTT101/YJL047C
  RTT103/YDR289C	RTT105/YER104W	RTT106/YNL206C	RTT107/YHR154W	RTT109/YLL002W
  SCS7/YMR272C	SIC1/YLR079W	SIN3/YOL004W	SNR128/snR128	SNR13/snR13
  SNR18/snR18	SNR24/snR24	SNR35/snR35	SNR38/snR38	SNR39/snR39
  SNR39B/snR39B	SNR40/snR40	SNR41/snR41	SNR47/snR47	SNR48/snR48
  SNR50/snR50	SNR51/snR51	SNR52/snR52	SNR53/snR53	SNR54/snR54
  SNR55/snR55	SNR56/snR56	SNR57/snR57	SNR58/snR58	SNR59/snR59
  SNR60/snR60	SNR61/snR61	SNR62/snR62	SNR63/snR63	SNR64/snR64
  SNR65/snR65	SNR66/snR66	SNR67/snR67	SNR68/snR68	SNR69/snR69
  SNR70/snR70	SNR71/snR71	SNR72/snR72	SNR73/snR73	SNR74/snR74
  SNR75/snR75	SNR76/snR76	SNR77/snR77	SNR78/snR78	SNR79/snR79
  SNR80/snR80	SNR81/snR81	SNR82/snR82	SNR83/snR83	SNR84/snR84
  SNR85/snR85	SNR87/snR87	SNR9/snR9	SOH1/YGL127C	SPT21/YMR179W
  SPT5/YML010W	SRB5/YGR104C	SSK2/YNR031C	SSK22/YCR073C	SSM4/YIL030C
  THI71/YOR071C	UBX2/YML013W	UFD1/YGR048W	USA1/YML029W	YFH7/YFR007W
  YOS9/YDR057W

SGD RSS Feed - February 12, 2008

• Updates and announcements from SGD are now available via our RSS feed. To read it, you will need to subscribe to our RSS feed using an RSS news reader. Applications that can read our RSS feed include FeedDemon, Firefox, Safari, Mac Mail version 3.1, and Google Reader.

SGD Quarterly Newsletter - January 31, 2008

• SGD sends out its quarterly newsletter to colleagues designated as contacts in SGD. An HTML version of the newsletter is available. If you would like to receive this letter in the future please use the Colleague Submission/Update form to let us know.

Update on Yeast Biochemical Pathways - January 29, 2008

• All 133 pathways available from the Yeast Biochemical Pathways have been manually reviewed and referenced. In addition, pathways that have not been documented to occur in yeast have been removed. Curation of pathways unique to S. cerevisiae is ongoing, and we welcome feedback from the research community.

  The yeast biochemical pathways data are available from SGD's FTP site in two files: the biochemical_pathways.tab file and yeastcyc11.0.tar.200801.gz. These files are updated monthly. In addition, for easy download and accessibility, the yeastcyc11.0 data files are also available for download through the Pathways PGDB Registry for use with the Pathway Tools software.

2008 NAR Database Article - January 8, 2008

• The 2008 Nucleic Acids Research Database issue is now available. This issue includes a paper (HTML | PDF) by the SGD staff describing the annotation methods used to assign GO annotations at SGD.